STAG2

General Information

Gene Name : STAG2
Gene ID : ENSG00000101972.18
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: STAG2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	STAG2	ENSG00000101972.18	49.38	43.43	46.41	ENCSR000AEF
HepG2	STAG2	ENSG00000101972.18	18.65	32.92	25.79	ENCSR985KAT
K562	STAG2	ENSG00000101972.18	55.02	59.09	57.06	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for STAG2 is not avaliable on ENCORE database.

Proteins bound to RNA

STAG2 RNA is bound by 36 proteins.

CanvasJS.com

eCLIP assay for STAG2 is not avaliable on ENCORE database.

36 proteins are bound to STAG2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chrX	123234538	123234555	+	3'-UTR,intron-Distal	7.56979	39.27612	HepG2	SUB1
chrX	123234492	123234538	+	3'-UTR,intron-Distal	7.61386	36.70742	HepG2	SUB1
chrX	123234555	123234621	+	3'-UTR,intron-Distal	6.38737	33.25130	HepG2	SUB1
chrX	123184035	123184078	+	CDS,intron-Distal,intron-Proximal	3.85349	32.31503	K562	PUM2
chrX	123182921	123182929	+	CDS,intron-Distal,intron-Proximal	4.60496	30.88396	K562	PUM2
chrX	123202479	123202506	+	CDS,intron-Distal	4.95517	29.53907	K562	YBX3
chrX	123182882	123182921	+	CDS,intron-Distal	4.66306	28.97054	K562	PUM2
chrX	123184082	123184146	+	CDS,intron-Distal	3.66963	27.21857	K562	PUM2
chrX	123230705	123230775	+	intron-Distal	5.39562	21.59900	HepG2	QKI
chrX	123176373	123176455	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.15948	20.22844	K562	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 206 entries

eCLIP assay for STAG2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for STAG2 is not available on ENCORE database.
120 RBPs can affect the levels of STAG2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for STAG2 is not available on ENCORE database.

120 RBPs can affect the gene expression of STAG2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
STAG2	ENSG00000101972.14	1152.28860	2985.77490	-1.37360	59.48540	57.70270	HepG2	RBM22
STAG2	ENSG00000101972.14	666.74560	1960.32240	-1.55590	42.35120	40.03410	HepG2	HNRNPC
STAG2	ENSG00000101972.14	485.51850	1785.83560	-1.87900	39.48280	37.37640	HepG2	DDX21
STAG2	ENSG00000101972.14	2016.64400	4475.36420	-1.15000	35.56590	33.50530	K562	HNRNPC
STAG2	ENSG00000101972.14	870.44130	1777.78030	-1.03030	29.10630	26.23820	HepG2	YBX3
STAG2	ENSG00000101972.14	944.18680	1892.25730	-1.00300	25.30680	24.08100	HepG2	TIAL1
STAG2	ENSG00000101972.14	1190.14300	2887.82590	-1.27880	24.97380	23.20740	HepG2	NCBP2
STAG2	ENSG00000101972.14	1438.84800	2231.76910	-0.63330	20.46270	19.31410	HepG2	ZNF622
STAG2	ENSG00000101972.14	726.20320	1432.92150	-0.98050	18.73300	17.34410	HepG2	RPS19
STAG2	ENSG00000101972.14	909.16970	1762.38780	-0.95490	18.13780	16.72120	HepG2	HNRNPA1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 140 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for STAG2 is not available on ENCORE database.

29 RBPs can affect the splicing of STAG2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	STAG2	ENSG00000101972.14	chrX	+	123224703	123224814	123224424	123224614	123227867	123227994	0.31600	0.00000	included	HepG2	U2AF1
SE	STAG2	ENSG00000101972.14	chrX	+	123155216	123155281	123095587	123095706	123156380	123156521	0.35700	0.00000	included	HepG2	U2AF1
SE	STAG2	ENSG00000101972.14	chrX	+	123224703	123224814	123224424	123224614	123227867	123227994	0.21500	0.00000	included	HepG2	U2AF2
SE	STAG2	ENSG00000101972.14	chrX	+	123211806	123211908	123210181	123210321	123215229	123215378	-0.06400	0.00000	excluded	K562	PUS1
SE	STAG2	ENSG00000101972.14	chrX	+	123211806	123211908	123210181	123210321	123215229	123215378	-0.14300	0.00000	excluded	K562	U2AF1
SE	STAG2	ENSG00000101972.14	chrX	+	123211806	123211908	123210181	123210321	123215229	123215378	-0.06700	0.00007	excluded	K562	U2AF2
SE	STAG2	ENSG00000101972.14	chrX	+	123224703	123224814	123224424	123224614	123227867	123227994	-0.08300	0.00027	excluded	K562	RBM15
SE	STAG2	ENSG00000101972.14	chrX	+	123155216	123155281	123095587	123095706	123156380	123156521	-0.07200	0.00004	excluded	K562	RBM15
SE	STAG2	ENSG00000101972.14	chrX	+	123224703	123224814	123224424	123224614	123227867	123227994	0.16900	0.00003	included	K562	CPSF6
A3SS	STAG2	ENSG00000101972.14	chrX	+	123220378	123220620	123220396	123220620	123217270	123217399	0.05300	0.00000	longer	K562	AQR

Showing 1 to 10 of 50 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

STAG2

General Information

Functions

Localization

Domains (AlphaFold: STAG2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for STAG2 is not avaliable on ENCORE database.

36 proteins are bound to STAG2 RNA:

eCLIP assay for STAG2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for STAG2 is not available on ENCORE database.

120 RBPs can affect the gene expression of STAG2 :

The Knockdown/knockout RNA-Seq assay for STAG2 is not available on ENCORE database.

29 RBPs can affect the splicing of STAG2 :

The Knockdown/knockout RNA-Seq assay for STAG2 is not avaliable on ENCORE database.