SNRPA

General Information

Gene Name : SNRPA
Gene ID : ENSG00000077312.8
Essential Gene : Yes

Functions

Spliceosome
3' end processing

Localization

Not Available

Domains (AlphaFold: SNRPA)

RRM

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNRPA	ENSG00000077312.8	103.24	112.82	108.03	ENCSR000AEF
HepG2	SNRPA	ENSG00000077312.8	207.34	130.60	168.97	ENCSR985KAT
K562	SNRPA	ENSG00000077312.8	148.01	176.26	162.13	ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	SNRPA-BG293LV06-WT293		SNRPA	293T	Released			shRNA	KD% = ,
RNA Bind-n-Seq	RBNS: SNRPA	ENCSR167ZZB	SNRPA	cell-free sample	Released		ENCSR335RUM

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
SNRPA	293T	shRNA			SNRPA-BG293LV02-45,SNRPA-BG293LV02-46	NT-BG293LV02-1,NT-BG293LV02-2	,	Revoked	ENCORE2
SNRPA	293T	shRNA			SNRPA-BG293LV06-109B,SNRPA-BG293LV06-110B	NT-BG293LV06-1B,NT-BG293LV06-2B	,	Released	ENCORE2

RNA Bind-n-Seqn

GeneName	gene_aliases	Status	Project	Note
SNRPA	SNRPA		Released	ENCODE3

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNRPA is not avaliable on ENCORE database.

The binding motifs of SNRPA

Proteins bound to RNA

SNRPA RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for SNRPA is not avaliable on ENCORE database.

26 proteins are bound to SNRPA RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	41271166	41271210	+	3'-UTR	6.54915	86.16054	K562	AATF
chr19	41271071	41271211	+	3'-UTR	6.16423	79.85350	K562	PCBP1
chr19	41271210	41271260	+	3'-UTR	6.97016	74.98535	K562	AATF
chr19	41271181	41271262	+	3'-UTR	3.48074	24.23977	K562	GEMIN5
chr19	41265351	41265412	+	3'-UTR,CDS	3.45416	18.89408	K562	ZNF622
chr19	41265412	41265452	+	3'-UTR,CDS	4.38455	18.52359	K562	ZNF622
chr19	41271064	41271167	+	3'-UTR,CDS	4.61117	17.94219	HepG2	LARP4
chr19	41269090	41269209	+	intron-Distal	6.54757	17.05446	HepG2	EFTUD2
chr19	41265358	41265447	+	3'-UTR,CDS	3.32410	14.22579	K562	UCHL5
chr19	41265452	41265480	+	3'-UTR,CDS	3.79852	13.88951	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 61 entries

eCLIP assay for SNRPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNRPA is not available on ENCORE database.
152 RBPs can affect the levels of SNRPA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNRPA is not available on ENCORE database.

152 RBPs can affect the gene expression of SNRPA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNRPA	ENSG00000077312.4	489.58550	1670.74310	-1.77090	50.82140	48.79430	HepG2	RPLP0
SNRPA	ENSG00000077312.4	743.71110	1624.67350	-1.12730	46.14170	44.61210	HepG2	ZNF622
SNRPA	ENSG00000077312.4	1566.62810	3806.82900	-1.28090	41.84570	39.61970	K562	HNRNPC
SNRPA	ENSG00000077312.4	1712.98250	3791.64020	-1.14630	38.17270	35.59980	K562	POLR2G
SNRPA	ENSG00000077312.4	647.61160	1776.77270	-1.45610	35.95920	34.23130	HepG2	BOP1
SNRPA	ENSG00000077312.4	578.57620	1438.82300	-1.31430	32.94010	30.88850	HepG2	CALR
SNRPA	ENSG00000077312.4	3911.12360	6448.71800	-0.72140	27.72600	25.87110	K562	DDX47
SNRPA	ENSG00000077312.4	724.89000	1626.30040	-1.16580	25.00460	23.76060	HepG2	RBM22
SNRPA	ENSG00000077312.4	736.82240	1720.04530	-1.22310	25.16180	23.40230	HepG2	TARDBP
SNRPA	ENSG00000077312.4	588.45920	1943.25640	-1.72350	25.26350	23.00460	HepG2	SNRNP70
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 190 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNRPA is not available on ENCORE database.

3 RBPs can affect the splicing of SNRPA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	SNRPA	ENSG00000077312.4	chr19	+	41257291	41257386	41263236	41263409	41256775	41256882	41265335	41265515	0.05700	0.00004	0.01233	1included	K562	GEMIN5
MXE	SNRPA	ENSG00000077312.4	chr19	+	41257291	41257386	41263236	41263409	41256775	41256882	41265335	41265515	0.06100	0.00007	0.00206	1included	K562	SRSF1
A3SS	SNRPA	ENSG00000077312.4	chr19	+	41263214	41263409			41263271	41263409	41256779	41257386	0.53900	0.00038	0.00294	longer	K562	AQR

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNRPA

General Information

Functions

Localization

Domains (AlphaFold: SNRPA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNRPA is not avaliable on ENCORE database.

26 proteins are bound to SNRPA RNA:

eCLIP assay for SNRPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNRPA is not available on ENCORE database.

152 RBPs can affect the gene expression of SNRPA :

The Knockdown/knockout RNA-Seq assay for SNRPA is not available on ENCORE database.

3 RBPs can affect the splicing of SNRPA :

The Knockdown/knockout RNA-Seq assay for SNRPA is not avaliable on ENCORE database.