SMARCC1

General Information

Gene Name : SMARCC1
Gene ID : ENSG00000173473.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SMARCC1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SMARCC1	ENSG00000173473.10	53.11	57.52	55.31	ENCSR000AEF
HepG2	SMARCC1	ENSG00000173473.10	37.27	42.39	39.83	ENCSR985KAT
K562	SMARCC1	ENSG00000173473.10	89.26	85.51	87.39	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SMARCC1 is not avaliable on ENCORE database.

Proteins bound to RNA

SMARCC1 RNA is bound by 61 proteins.

CanvasJS.com

eCLIP assay for SMARCC1 is not avaliable on ENCORE database.

61 proteins are bound to SMARCC1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	47676683	47676799	-	CDS,intron-Distal	4.31335	72.47657	K562	UCHL5
chr3	47727578	47727629	-	CDS,intron-Distal	5.38646	59.45903	K562	UCHL5
chr3	47727629	47727660	-	CDS,intron-Distal	4.57831	58.95261	K562	UCHL5
chr3	47742770	47742890	-	CDS,intron-Distal	3.47657	53.36836	K562	ZNF622
chr3	47730876	47730907	-	CDS,intron-Distal,intron-Proximal	4.88395	52.07990	K562	UCHL5
chr3	47672530	47672613	-	intron-Distal	6.50356	51.43858	K562	PTBP1
chr3	47628703	47628732	-	3'-UTR,intron-Distal	4.49553	46.03253	K562	PABPC4
chr3	47742767	47742849	-	CDS,intron-Distal,intron-Proximal	3.53454	43.72593	K562	UCHL5
chr3	47752172	47752251	-	CDS,intron-Distal,intron-Proximal	3.65836	42.38725	K562	UCHL5
chr3	47814305	47814357	-	CDS,intron-Distal,intron-Proximal	6.14609	40.98223	K562	LIN28B
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 399 entries

eCLIP assay for SMARCC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SMARCC1 is not available on ENCORE database.
93 RBPs can affect the levels of SMARCC1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SMARCC1 is not available on ENCORE database.

93 RBPs can affect the gene expression of SMARCC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SMARCC1	ENSG00000173473.6	2638.54260	4428.87280	-0.74720	39.06150	37.62910	HepG2	ZNF622
SMARCC1	ENSG00000173473.6	3726.96850	6337.57580	-0.76590	31.94020	30.29010	HepG2	ETF1
SMARCC1	ENSG00000173473.6	1347.95990	3110.22440	-1.20620	31.58110	29.53840	HepG2	HNRNPC
SMARCC1	ENSG00000173473.6	1979.24960	4246.57940	-1.10130	31.10950	29.40310	HepG2	PUF60
SMARCC1	ENSG00000173473.6	1500.07960	3001.97760	-1.00090	29.10060	27.79540	HepG2	TIAL1
SMARCC1	ENSG00000173473.6	3274.04760	5194.14480	-0.66580	25.90730	24.69590	HepG2	SSB
SMARCC1	ENSG00000173473.6	2344.12590	6421.78000	-1.45390	25.96300	24.21700	K562	HNRNPC
SMARCC1	ENSG00000173473.6	1978.31470	4686.21630	-1.24420	25.55140	23.82420	HepG2	GPKOW
SMARCC1	ENSG00000173473.6	1620.21090	3743.27660	-1.20810	23.71720	21.98830	HepG2	NCBP2
SMARCC1	ENSG00000173473.6	1847.33470	3948.12030	-1.09570	20.85420	19.30230	HepG2	DDX3X
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SMARCC1 is not available on ENCORE database.

19 RBPs can affect the splicing of SMARCC1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SMARCC1	ENSG00000173473.6	chr3	-	47632150	47632327			47629079	47629796	47651555	47651817	-0.10300	0.00000	0.00001	excluded	K562	SUPV3L1
A3SS	SMARCC1	ENSG00000173473.6	chr3	-	47702783	47702975			47702783	47702945	47703823	47704082	0.06500	0.00000	0.00000	longer	K562	AQR
A3SS	SMARCC1	ENSG00000173473.6	chr3	-	47727538	47727697			47727538	47727660	47730876	47730914	0.06100	0.00000	0.00000	longer	K562	AQR
A3SS	SMARCC1	ENSG00000173473.6	chr3	-	47680214	47680432			47680214	47680270	47702783	47702979	0.13700	0.00000	0.00000	longer	K562	AQR
MXE	SMARCC1	ENSG00000173473.6	chr3	-	47703823	47704082	47712147	47712249	47702783	47702945	47716964	47717078	0.06300	0.00000	0.00001	1included	K562	AQR
SE	SMARCC1	ENSG00000173473.6	chr3	-	47712147	47712207			47703823	47704082	47716964	47717078	-0.14500	0.00001	0.00086	excluded	HepG2	SF3A3
SE	SMARCC1	ENSG00000173473.6	chr3	-	47632150	47632327			47629079	47629796	47651555	47651817	-0.13900	0.00002	0.02883	excluded	HepG2	RBM5
MXE	SMARCC1	ENSG00000173473.6	chr3	-	47787397	47787483	47814306	47814426	47779518	47779600	47823092	47823407	-0.18800	0.00002	0.00218	2included	K562	TAF15
MXE	SMARCC1	ENSG00000173473.6	chr3	-	47712147	47712207	47718118	47718272	47702783	47702945	47719687	47719801	-0.05300	0.00003	0.00039	2included	K562	AQR
MXE	SMARCC1	ENSG00000173473.6	chr3	-	47677511	47677626	47680214	47680270	47676679	47676834	47702783	47702945	0.13500	0.00021	0.01583	1included	K562	SAFB

Showing 1 to 10 of 28 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SMARCC1

General Information

Functions

Localization

Domains (AlphaFold: SMARCC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SMARCC1 is not avaliable on ENCORE database.

61 proteins are bound to SMARCC1 RNA:

eCLIP assay for SMARCC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SMARCC1 is not available on ENCORE database.

93 RBPs can affect the gene expression of SMARCC1 :

The Knockdown/knockout RNA-Seq assay for SMARCC1 is not available on ENCORE database.

19 RBPs can affect the splicing of SMARCC1 :

The Knockdown/knockout RNA-Seq assay for SMARCC1 is not avaliable on ENCORE database.