RPL27A

General Information

Gene Name : RPL27A
Gene ID : ENSG00000166441.12
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RPL27A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RPL27A	ENSG00000166441.12	1621.14	3250.42	2435.78	ENCSR000AEF
HepG2	RPL27A	ENSG00000166441.12	1942.51	2020.99	1981.75	ENCSR985KAT
K562	RPL27A	ENSG00000166441.12	2502.37	2852.51	2677.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RPL27A is not avaliable on ENCORE database.

Proteins bound to RNA

RPL27A RNA is bound by 27 proteins.

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eCLIP assay for RPL27A is not avaliable on ENCORE database.

27 proteins are bound to RPL27A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	8707320	8707379	+	3'-UTR,CDS	3.68551	400.00000	K562	PABPC4
chr11	8707246	8707265	+	3'-UTR,CDS	4.89892	400.00000	K562	LIN28B
chr11	8707275	8707280	+	3'-UTR,CDS	3.74360	400.00000	K562	YBX3
chr11	8707272	8707275	+	3'-UTR,CDS	3.81180	400.00000	K562	YBX3
chr11	8707268	8707270	+	3'-UTR,CDS	3.38776	400.00000	K562	YBX3
chr11	8706395	8706435	+	3'-UTR,CDS,intron-Distal	3.15484	400.00000	K562	PABPC4
chr11	8706372	8706400	+	3'-UTR,CDS,intron-Distal	3.16227	400.00000	K562	YBX3
chr11	8707230	8707306	+	3'-UTR,CDS	3.86925	400.00000	K562	PABPC4
chr11	8707316	8707380	+	3'-UTR,CDS	5.23743	400.00000	HepG2	SUB1
chr11	8707254	8707259	+	3'-UTR,CDS	3.17867	400.00000	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 119 entries

eCLIP assay for RPL27A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RPL27A is not available on ENCORE database.
129 RBPs can affect the levels of RPL27A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RPL27A is not available on ENCORE database.

129 RBPs can affect the gene expression of RPL27A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RPL27A	ENSG00000166441.8	7550.91040	28289.82870	-1.90560	271.43170	268.78550	HepG2	SRSF1
RPL27A	ENSG00000166441.8	8417.96210	26033.16220	-1.62880	161.26760	158.71220	HepG2	PTBP1
RPL27A	ENSG00000166441.8	10008.31660	28971.85870	-1.53350	153.14770	150.75610	HepG2	NELFE
RPL27A	ENSG00000166441.8	10576.26780	28193.14340	-1.41450	87.12840	84.52000	HepG2	QKI
RPL27A	ENSG00000166441.8	8317.60000	25587.62400	-1.62120	82.39450	79.23210	HepG2	RBM25
RPL27A	ENSG00000166441.8	13798.19100	27102.69230	-0.97400	66.25790	64.11180	HepG2	SF3B4
RPL27A	ENSG00000166441.8	14447.39500	26984.34900	-0.90130	57.52390	55.50080	HepG2	RECQL
RPL27A	ENSG00000166441.8	6999.69100	25494.42600	-1.86480	57.16080	54.60730	HepG2	MATR3
RPL27A	ENSG00000166441.8	14751.36150	5963.20890	1.30660	55.51170	53.20860	HepG2	SAFB2
RPL27A	ENSG00000166441.8	8324.81510	26094.94400	-1.64830	49.01500	46.59000	HepG2	NCBP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 156 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RPL27A is not available on ENCORE database.

24 RBPs can affect the splicing of RPL27A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	RPL27A	ENSG00000166441.8	chr11	+	8706243	8706364			8705552	8705628	8707224	8707395	0.68200	0.00000	included	K562	AQR
SE	RPL27A	ENSG00000166441.8	chr11	+	8706369	8706427			8705412	8705628	8707224	8707395	-0.29500	0.00001	excluded	K562	AQR
A3SS	RPL27A	ENSG00000166441.8	chr11	+	8705409	8705628			8705536	8705628	8704734	8704812	-0.40800	0.00043	shorter	K562	RBM22
A3SS	RPL27A	ENSG00000166441.8	chr11	+	8706243	8706439			8706369	8706439	8705552	8705628	0.43100	0.00000	longer	K562	U2AF2
A3SS	RPL27A	ENSG00000166441.8	chr11	+	8705536	8705628			8705552	8705628	8704747	8704812	0.06500	0.00000	longer	K562	AQR
A3SS	RPL27A	ENSG00000166441.8	chr11	+	8705409	8705628			8705536	8705628	8704593	8704812	-0.52500	0.00000	shorter	K562	AQR
A3SS	RPL27A	ENSG00000166441.8	chr11	+	8706243	8706439			8706369	8706439	8705552	8705628	0.24800	0.00000	longer	K562	U2AF1
MXE	RPL27A	ENSG00000166441.8	chr11	+	8705552	8705628	8706264	8706439	8704748	8704812	8707224	8707394	0.11700	0.00047	1included	K562	PTBP1
MXE	RPL27A	ENSG00000166441.8	chr11	+	8705552	8705628	8706264	8706439	8704748	8704812	8707224	8707394	0.11400	0.00026	1included	HepG2	UCHL5
MXE	RPL27A	ENSG00000166441.8	chr11	+	8705552	8705628	8706264	8706439	8704748	8704812	8707224	8707394	0.16700	0.00000	1included	K562	SRSF1

Showing 1 to 10 of 52 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RPL27A

General Information

Functions

Localization

Domains (AlphaFold: RPL27A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RPL27A is not avaliable on ENCORE database.

27 proteins are bound to RPL27A RNA:

eCLIP assay for RPL27A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RPL27A is not available on ENCORE database.

129 RBPs can affect the gene expression of RPL27A :

The Knockdown/knockout RNA-Seq assay for RPL27A is not available on ENCORE database.

24 RBPs can affect the splicing of RPL27A :

The Knockdown/knockout RNA-Seq assay for RPL27A is not avaliable on ENCORE database.