PTPN12

General Information

Gene Name : PTPN12
Gene ID : ENSG00000127947.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PTPN12)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTPN12	ENSG00000127947.15	39.99	35.97	37.98	ENCSR000AEF
HepG2	PTPN12	ENSG00000127947.15	38.06	57.92	47.99	ENCSR985KAT
K562	PTPN12	ENSG00000127947.15	47.75	53.64	50.70	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTPN12 is not avaliable on ENCORE database.

Proteins bound to RNA

PTPN12 RNA is bound by 58 proteins.

CanvasJS.com

eCLIP assay for PTPN12 is not avaliable on ENCORE database.

58 proteins are bound to PTPN12 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	77166808	77166878	+	5'-UTR,CDS	4.61123	85.25965	HepG2	FAM120A
chr7	77166767	77166808	+	5'-UTR	5.14084	69.59242	HepG2	FAM120A
chr7	77166735	77166767	+	5'-UTR	5.21858	57.72988	HepG2	FAM120A
chr7	77166804	77166894	+	5'-UTR,CDS	4.65115	57.38027	HepG2	CSTF2T
chr7	77166598	77166669	+	5'-UTR	6.16046	54.76924	K562	GTF2F1
chr7	77166600	77166661	+	5'-UTR	4.60341	49.90918	HepG2	FAM120A
chr7	77166825	77166854	+	5'-UTR	4.97216	48.77567	HepG2	PRPF4
chr7	77166815	77166897	+	5'-UTR,CDS	6.76427	45.19232	K562	FAM120A
chr7	77166719	77166804	+	5'-UTR	5.37661	44.12775	HepG2	CSTF2T
chr7	77166810	77166877	+	5'-UTR,CDS	5.12078	42.40947	K562	GTF2F1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 212 entries

eCLIP assay for PTPN12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTPN12 is not available on ENCORE database.
101 RBPs can affect the levels of PTPN12.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PTPN12 is not available on ENCORE database.

101 RBPs can affect the gene expression of PTPN12 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTPN12	ENSG00000127947.11	1372.12800	3218.75530	-1.23010	43.38470	41.84760	HepG2	TIAL1
PTPN12	ENSG00000127947.11	1270.32420	3334.81760	-1.39240	41.62510	39.31890	HepG2	HNRNPC
PTPN12	ENSG00000127947.11	1240.49020	3747.23100	-1.59490	40.87400	38.75390	HepG2	DDX3X
PTPN12	ENSG00000127947.11	1827.73040	3312.76550	-0.85800	33.94980	32.03840	HepG2	HNRNPU
PTPN12	ENSG00000127947.11	1821.87750	3267.51500	-0.84280	33.06060	31.73680	HepG2	SSB
PTPN12	ENSG00000127947.11	1476.25930	3552.64310	-1.26690	25.44330	23.65840	HepG2	NCBP2
PTPN12	ENSG00000127947.11	1388.91470	3419.74280	-1.29990	23.94020	22.10290	HepG2	EIF4A3
PTPN12	ENSG00000127947.11	1850.20420	3555.78600	-0.94250	22.78670	21.29580	HepG2	PUF60
PTPN12	ENSG00000127947.11	5413.24140	3763.39080	0.52440	17.67820	16.70080	HepG2	SRFBP1
PTPN12	ENSG00000127947.11	1689.02330	2519.29660	-0.57680	17.52820	16.16750	HepG2	CKAP4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTPN12 is not available on ENCORE database.

17 RBPs can affect the splicing of PTPN12 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTPN12	ENSG00000127947.11	chr7	+	77210743	77210820			77200394	77200503	77214859	77214898	0.11600	0.00000	0.00175	included	K562	METAP2
SE	PTPN12	ENSG00000127947.11	chr7	+	77266312	77266365			77265098	77265166	77267940	77268258	-0.11800	0.00000	0.00000	excluded	K562	AQR
SE	PTPN12	ENSG00000127947.11	chr7	+	77210743	77210820			77200266	77200503	77214859	77214898	-0.16100	0.00000	0.00002	excluded	K562	AQR
SE	PTPN12	ENSG00000127947.11	chr7	+	77212871	77212967			77210743	77210820	77214859	77214898	-0.12500	0.00000	0.00000	excluded	K562	PUS1
SE	PTPN12	ENSG00000127947.11	chr7	+	77210743	77210820			77200394	77200503	77214859	77214898	-0.18100	0.00000	0.00000	excluded	K562	UTP18
SE	PTPN12	ENSG00000127947.11	chr7	+	77266334	77266365			77265098	77265166	77267940	77268048	-0.13500	0.00000	0.00006	excluded	K562	SF3B1
MXE	PTPN12	ENSG00000127947.11	chr7	+	77214859	77214898	77221501	77221573	77200394	77200503	77227158	77227218	0.14700	0.00000	0.00000	1included	K562	PUS1
MXE	PTPN12	ENSG00000127947.11	chr7	+	77214859	77214898	77221501	77221573	77200394	77200503	77227158	77227218	0.17700	0.00000	0.00002	1included	K562	AQR
SE	PTPN12	ENSG00000127947.11	chr7	+	77212871	77212967			77210743	77210820	77214859	77214898	-0.08400	0.00001	0.00044	excluded	K562	AGGF1
MXE	PTPN12	ENSG00000127947.11	chr7	+	77214859	77214898	77221501	77221573	77200394	77200503	77227158	77227218	-0.11900	0.00001	0.00667	2included	K562	METAP2

Showing 1 to 10 of 28 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTPN12

General Information

Functions

Localization

Domains (AlphaFold: PTPN12)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTPN12 is not avaliable on ENCORE database.

58 proteins are bound to PTPN12 RNA:

eCLIP assay for PTPN12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTPN12 is not available on ENCORE database.

101 RBPs can affect the gene expression of PTPN12 :

The Knockdown/knockout RNA-Seq assay for PTPN12 is not available on ENCORE database.

17 RBPs can affect the splicing of PTPN12 :

The Knockdown/knockout RNA-Seq assay for PTPN12 is not avaliable on ENCORE database.