NINL

General Information

Gene Name : NINL
Gene ID : ENSG00000101004.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NINL)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NINL	ENSG00000101004.14	0.02	0.05	0.04	ENCSR000AEF
HepG2	NINL	ENSG00000101004.14	28.34	26.41	27.38	ENCSR985KAT
K562	NINL	ENSG00000101004.14	0.02	0.02	0.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NINL is not avaliable on ENCORE database.

Proteins bound to RNA

NINL RNA is bound by 51 proteins.

CanvasJS.com

eCLIP assay for NINL is not avaliable on ENCORE database.

51 proteins are bound to NINL RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	25529477	25529589	-	intron-Distal	6.32397	78.23079	HepG2	FAM120A
chr20	25529225	25529349	-	intron-Distal	4.68370	74.41634	HepG2	FAM120A
chr20	25529589	25529683	-	intron-Distal	6.31975	72.13584	HepG2	FAM120A
chr20	25529246	25529367	-	intron-Distal	5.98903	67.87468	HepG2	CSTF2T
chr20	25529128	25529225	-	intron-Distal	4.83683	51.92724	HepG2	FAM120A
chr20	25529159	25529226	-	intron-Distal	4.70961	50.20582	HepG2	CSTF2T
chr20	25529423	25529477	-	intron-Distal	7.45350	48.19032	HepG2	FAM120A
chr20	25529475	25529526	-	intron-Distal	5.99312	47.88824	HepG2	CSTF2T
chr20	25493423	25493512	-	CDS,intron-Distal,intron-Proximal	4.08206	43.38069	HepG2	PRPF8
chr20	25529972	25530069	-	intron-Distal	4.80134	42.27336	HepG2	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 274 entries

eCLIP assay for NINL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NINL is not available on ENCORE database.
55 RBPs can affect the levels of NINL.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NINL is not available on ENCORE database.

55 RBPs can affect the gene expression of NINL :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NINL	ENSG00000101004.10	2810.00050	1290.80970	1.12220	24.28710	22.42210	HepG2	HNRNPK
NINL	ENSG00000101004.10	1135.54230	1815.25130	-0.67680	16.40670	15.12800	HepG2	UTP3
NINL	ENSG00000101004.10	1759.94810	1184.07010	0.57170	13.11730	12.07370	HepG2	SRSF9
NINL	ENSG00000101004.10	2119.45600	1490.46440	0.50780	10.18880	9.27180	HepG2	NELFE
NINL	ENSG00000101004.10	1313.99680	918.93040	0.51580	8.63380	7.72420	HepG2	TRIM56
NINL	ENSG00000101004.10	1188.27860	834.72050	0.50940	8.57630	7.53440	HepG2	SAFB2
NINL	ENSG00000101004.10	1753.88930	1316.15130	0.41410	6.98890	6.09630	HepG2	PCBP1
NINL	ENSG00000101004.10	1282.04490	848.27560	0.59570	7.04490	6.08530	HepG2	HNRNPA1
NINL	ENSG00000101004.10	1281.16860	1721.79320	-0.42650	7.19460	5.70970	HepG2	HDGF
NINL	ENSG00000101004.10	1831.18580	1388.30670	0.39940	6.55250	5.66150	HepG2	RECQL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 55 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NINL is not available on ENCORE database.

18 RBPs can affect the splicing of NINL :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	NINL	ENSG00000101004.10	chr20	-	25490305	25490425	25485523	25485714	25491309	25491376	0.23600	0.00000	0.00000	included	HepG2	G3BP1
SE	NINL	ENSG00000101004.10	chr20	-	25479583	25479762	25478845	25478982	25481475	25481646	0.29300	0.00000	0.00000	included	HepG2	HNRNPK
SE	NINL	ENSG00000101004.10	chr20	-	25460199	25460308	25459558	25459842	25460796	25460903	0.34000	0.00000	0.00000	included	HepG2	HNRNPK
SE	NINL	ENSG00000101004.10	chr20	-	25439817	25439991	25439018	25439165	25442157	25442271	0.29000	0.00000	0.00000	included	HepG2	HNRNPK
SE	NINL	ENSG00000101004.10	chr20	-	25490305	25490425	25485523	25485714	25491309	25491376	0.17600	0.00000	0.00006	included	HepG2	MATR3
SE	NINL	ENSG00000101004.10	chr20	-	25490305	25490425	25485523	25485714	25491309	25491376	0.18300	0.00000	0.00001	included	HepG2	SRSF1
SE	NINL	ENSG00000101004.10	chr20	-	25460199	25460308	25459558	25459842	25460796	25460903	0.06000	0.00000	0.00468	included	HepG2	SLTM
A3SS	NINL	ENSG00000101004.10	chr20	-	25478845	25478997	25478845	25478982	25481475	25481646	0.56300	0.00000	0.00000	longer	HepG2	U2AF2
SE	NINL	ENSG00000101004.10	chr20	-	25490305	25490425	25485523	25485714	25491309	25491376	0.10700	0.00008	0.00676	included	HepG2	PTBP1
SE	NINL	ENSG00000101004.10	chr20	-	25490305	25490425	25485523	25485714	25491309	25491376	0.15000	0.00011	0.01788	included	HepG2	LARP4

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NINL

General Information

Functions

Localization

Domains (AlphaFold: NINL)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NINL is not avaliable on ENCORE database.

51 proteins are bound to NINL RNA:

eCLIP assay for NINL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NINL is not available on ENCORE database.

55 RBPs can affect the gene expression of NINL :

The Knockdown/knockout RNA-Seq assay for NINL is not available on ENCORE database.

18 RBPs can affect the splicing of NINL :

The Knockdown/knockout RNA-Seq assay for NINL is not avaliable on ENCORE database.