DEPDC1

General Information

Gene Name : DEPDC1
Gene ID : ENSG00000024526.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: DEPDC1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DEPDC1	ENSG00000024526.16	15.70	12.47	14.09	ENCSR000AEF
HepG2	DEPDC1	ENSG00000024526.16	6.91	16.74	11.82	ENCSR985KAT
K562	DEPDC1	ENSG00000024526.16	14.73	17.26	16.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DEPDC1 is not avaliable on ENCORE database.

Proteins bound to RNA

DEPDC1 RNA is bound by 5 proteins.

CanvasJS.com

eCLIP assay for DEPDC1 is not avaliable on ENCORE database.

5 proteins are bound to DEPDC1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	68962634	68962788	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.13542	8.16459	K562	DDX3X
chr1	68954569	68954706	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.55962	6.71596	K562	UCHL5
chr1	68945568	68945735	-	intron-Distal	3.49540	5.20123	K562	KHSRP
chr1	68947631	68947715	-	intron-Distal,intron-Proximal	3.30526	4.35650	K562	KHSRP
chr1	68954586	68954664	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.82626	3.57857	HepG2	BCLAF1
chr1	68949596	68949644	-	CDS,intron-Distal,intron-Proximal	4.22346	3.02181	K562	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 6 of 6 entries

eCLIP assay for DEPDC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DEPDC1 is not available on ENCORE database.
167 RBPs can affect the levels of DEPDC1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for DEPDC1 is not available on ENCORE database.

167 RBPs can affect the gene expression of DEPDC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DEPDC1	ENSG00000024526.12	11.82710	658.58640	-5.79920	123.98080	121.44100	HepG2	BOP1
DEPDC1	ENSG00000024526.12	35.40100	513.26590	-3.85780	101.88000	99.86730	HepG2	ZNF622
DEPDC1	ENSG00000024526.12	70.52360	654.78580	-3.21480	83.78420	81.74490	HepG2	TIAL1
DEPDC1	ENSG00000024526.12	11.44600	430.92210	-5.23450	76.95330	74.31880	HepG2	EIF2S1
DEPDC1	ENSG00000024526.12	42.58010	584.38610	-3.77870	71.54590	69.16420	HepG2	SUPV3L1
DEPDC1	ENSG00000024526.12	134.98450	670.50870	-2.31250	69.45050	67.20310	HepG2	CKAP4
DEPDC1	ENSG00000024526.12	243.57850	913.82090	-1.90750	56.32330	54.18910	HepG2	CELF1
DEPDC1	ENSG00000024526.12	57.06130	451.93060	-2.98550	54.75750	52.68220	HepG2	RPS19
DEPDC1	ENSG00000024526.12	40.24790	450.72170	-3.48530	55.18100	52.47480	HepG2	ASCC1
DEPDC1	ENSG00000024526.12	77.16060	466.68600	-2.59650	54.17000	51.95780	HepG2	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 191 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DEPDC1 is not available on ENCORE database.

23 RBPs can affect the splicing of DEPDC1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	DEPDC1	ENSG00000024526.12	chr1	-	68947728	68948580	68947122	68947295	68949632	68949773	-0.17100	0.00000	excluded	K562	FTO
SE	DEPDC1	ENSG00000024526.12	chr1	-	68947728	68948580	68947122	68947295	68949632	68949773	-0.23700	0.00000	excluded	HepG2	U2AF1
SE	DEPDC1	ENSG00000024526.12	chr1	-	68947728	68948580	68947122	68947295	68949632	68949773	0.18100	0.00027	included	K562	AKAP8L
SE	DEPDC1	ENSG00000024526.12	chr1	-	68947728	68948580	68947122	68947295	68949632	68949773	0.45700	0.00000	included	HepG2	HNRNPM
SE	DEPDC1	ENSG00000024526.12	chr1	-	68947728	68948580	68947122	68947295	68949632	68949773	-0.11700	0.00083	excluded	K562	FMR1
SE	DEPDC1	ENSG00000024526.12	chr1	-	68947728	68948580	68947122	68947295	68949632	68949773	0.61300	0.00006	included	HepG2	QKI
SE	DEPDC1	ENSG00000024526.12	chr1	-	68947728	68948580	68947122	68947295	68949632	68949773	-0.33900	0.00000	excluded	HepG2	U2AF2
SE	DEPDC1	ENSG00000024526.12	chr1	-	68960112	68960378	68955134	68955291	68962634	68962797	-0.23700	0.00000	excluded	K562	AQR
SE	DEPDC1	ENSG00000024526.12	chr1	-	68947728	68948580	68947122	68947295	68949632	68949773	-0.27400	0.00000	excluded	K562	AQR
SE	DEPDC1	ENSG00000024526.12	chr1	-	68947728	68948580	68947122	68947295	68949632	68949773	0.24300	0.00006	included	K562	HNRNPM

Showing 1 to 10 of 35 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DEPDC1

General Information

Functions

Localization

Domains (AlphaFold: DEPDC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DEPDC1 is not avaliable on ENCORE database.

5 proteins are bound to DEPDC1 RNA:

eCLIP assay for DEPDC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DEPDC1 is not available on ENCORE database.

167 RBPs can affect the gene expression of DEPDC1 :

The Knockdown/knockout RNA-Seq assay for DEPDC1 is not available on ENCORE database.

23 RBPs can affect the splicing of DEPDC1 :

The Knockdown/knockout RNA-Seq assay for DEPDC1 is not avaliable on ENCORE database.