AFMID

General Information

Gene Name : AFMID
Gene ID : ENSG00000183077.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AFMID)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	AFMID	ENSG00000183077.15	44.67	53.04	48.86	ENCSR000AEF
HepG2	AFMID	ENSG00000183077.15	222.42	241.68	232.05	ENCSR985KAT
K562	AFMID	ENSG00000183077.15	86.06	89.66	87.86	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AFMID is not avaliable on ENCORE database.

Proteins bound to RNA

AFMID RNA is bound by 34 proteins.

CanvasJS.com

eCLIP assay for AFMID is not avaliable on ENCORE database.

34 proteins are bound to AFMID RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	76187138	76187192	+	CDS,intron-Proximal	5.70502	55.34602	HepG2	PRPF8
chr17	76187055	76187138	+	CDS	3.81048	55.17653	HepG2	PRPF8
chr17	76202732	76202842	+	intron-Distal	4.64675	46.30225	HepG2	PTBP1
chr17	76198871	76198924	+	intron-Distal,intron-Proximal	3.95247	35.79566	HepG2	EFTUD2
chr17	76203173	76203309	+	3'-UTR	5.44627	35.57758	HepG2	UPF1
chr17	76187063	76187083	+	CDS	4.55406	33.90229	HepG2	PPIG
chr17	76187083	76187106	+	CDS	3.84774	31.52024	HepG2	PPIG
chr17	76187191	76187269	+	intron-Distal,intron-Proximal	3.16895	28.94704	HepG2	EFTUD2
chr17	76187106	76187129	+	CDS	3.65825	28.50365	HepG2	PPIG
chr17	76187083	76187105	+	CDS	3.60952	27.79382	HepG2	GRWD1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 117 entries

eCLIP assay for AFMID is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AFMID is not available on ENCORE database.
133 RBPs can affect the levels of AFMID.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AFMID is not available on ENCORE database.

133 RBPs can affect the gene expression of AFMID :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AFMID	ENSG00000183077.11	7900.81330	3727.67010	1.08360	70.88740	69.18210	HepG2	SSB
AFMID	ENSG00000183077.11	1181.65900	5388.31900	-2.18900	65.05910	63.04660	HepG2	AKAP1
AFMID	ENSG00000183077.11	833.86180	1945.60810	-1.22230	59.74790	57.52290	HepG2	SMN1
AFMID	ENSG00000183077.11	2467.47920	5228.22220	-1.08330	57.85520	56.13890	HepG2	NELFE
AFMID	ENSG00000183077.11	1607.16370	3801.23930	-1.24200	55.18520	53.45200	HepG2	RBM22
AFMID	ENSG00000183077.11	2129.56250	4070.64090	-0.93470	49.30240	47.25780	HepG2	SUCLG1
AFMID	ENSG00000183077.11	2325.33940	4697.75750	-1.01450	48.88500	47.19890	HepG2	PTBP1
AFMID	ENSG00000183077.11	2705.34800	5105.21070	-0.91620	47.17930	45.74460	HepG2	SRSF1
AFMID	ENSG00000183077.11	2272.10770	4293.36650	-0.91810	44.82370	43.44490	HepG2	SRFBP1
AFMID	ENSG00000183077.11	2224.97740	1044.97230	1.09020	41.80980	39.64730	K562	AGGF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 154 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AFMID is not available on ENCORE database.

57 RBPs can affect the splicing of AFMID :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	AFMID	ENSG00000183077.11	chr17	+	76202026	76202131	76198783	76198832	76202991	76203782	-0.29600	0.00000	excluded	K562	SRSF1
SE	AFMID	ENSG00000183077.11	chr17	+	76202026	76202131	76187050	76187141	76202991	76203782	-0.28600	0.00017	excluded	K562	PRPF8
SE	AFMID	ENSG00000183077.11	chr17	+	76202026	76202131	76187050	76187141	76202991	76203782	-0.21400	0.00000	excluded	HepG2	U2AF1
SE	AFMID	ENSG00000183077.11	chr17	+	76200736	76200822	76198783	76198832	76200908	76200981	0.22000	0.00003	included	HepG2	ILF3
SE	AFMID	ENSG00000183077.11	chr17	+	76201683	76201819	76198783	76198832	76202026	76202131	0.24400	0.00002	included	HepG2	TROVE2
SE	AFMID	ENSG00000183077.11	chr17	+	76200736	76200822	76198783	76198832	76200908	76200981	-0.32800	0.00007	excluded	HepG2	GRWD1
SE	AFMID	ENSG00000183077.11	chr17	+	76202026	76202131	76198783	76198832	76202991	76203782	0.08500	0.00000	included	HepG2	HNRNPK
SE	AFMID	ENSG00000183077.11	chr17	+	76200736	76200822	76198783	76198832	76200908	76200981	0.20800	0.00004	included	HepG2	QKI
SE	AFMID	ENSG00000183077.11	chr17	+	76202026	76202131	76187050	76187141	76202991	76203782	-0.26500	0.00000	excluded	K562	PUS1
SE	AFMID	ENSG00000183077.11	chr17	+	76202026	76202131	76198783	76198832	76202991	76203486	-0.12800	0.00000	excluded	HepG2	MATR3

Showing 1 to 10 of 170 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AFMID

General Information

Functions

Localization

Domains (AlphaFold: AFMID)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AFMID is not avaliable on ENCORE database.

34 proteins are bound to AFMID RNA:

eCLIP assay for AFMID is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AFMID is not available on ENCORE database.

133 RBPs can affect the gene expression of AFMID :

The Knockdown/knockout RNA-Seq assay for AFMID is not available on ENCORE database.

57 RBPs can affect the splicing of AFMID :

The Knockdown/knockout RNA-Seq assay for AFMID is not avaliable on ENCORE database.