TAF9

General Information

Gene Name       : TAF9
Gene ID             : ENSG00000273841.4
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: TAF9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TAF9ENSG00000273841.4110.35103.13106.74ENCSR000AEF
HepG2TAF9ENSG00000273841.489.70124.67107.19ENCSR985KAT
K562TAF9ENSG00000273841.4185.98208.21197.09ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq TAF9-BGKcLV19-K562ENCSR490PSGTAF9K562ReleasedENCSR978MMZ   CRISPRKD% = 97.4,99.0
knockdown followed by RNA-seq TAF9-BGHcLV20-HepG2ENCSR861BRATAF9HepG2ReleasedENCSR306EWE   CRISPRKD% = 69.8,73.4






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
TAF9ENCAB320JFKPA5-40919TL2693011BGKcLV19-53, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
TAF9K562CRISPRBGKcLV15-57,BGKcLV15-58BGKcLV15-1,BGKcLV15-224.6,36.7NotSatisfiedENCODE4
TAF9K562CRISPRENCSR490PSGENCSR978MMZTAF9-BGKcLV19-53,TAF9-BGKcLV19-54NT-BGKcLV19-1,NT-BGKcLV19-297.4,99.0ReleasedENCODE4
TAF9K562CRISPRBGKcLV19-55,BGKcLV19-56BGKcLV19-1,BGKcLV19-284.2,81.7NotSatisfiedENCODE4
TAF9HepG2CRISPRBGHcLV16-53,BGHcLV16-54BGHcLV16-1,BGHcLV16-20.0,0.0NotSatisfiedENCODE4
TAF9HepG2CRISPRBGHcLV16-55,BGHcLV16-56BGHcLV16-1,BGHcLV16-20.0,0.0NotSatisfiedENCODE4
TAF9HepG2CRISPRENCSR861BRAENCSR306EWETAF9-BGHcLV20-37,TAF9-BGHcLV20-38NT-BGHcLV20-1,NT-BGHcLV20-269.8,73.4ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
TAF9Product_ID: PA5-40919
Lot_ID: TL2693011
Source: Thermo Fisher
Target Name: TAF9-human		 TAF9-K562-CRISPR-PA5-40919.png<br>Caption: Western blot following CRISPR against TAF9 in K562 whole cell lysate using TAF9 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against TAF9. TAF9 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








RNA Targets

  • eCLIP assay for TAF9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TAF9 RNA is bound by 18 proteins.  







eCLIP assay for TAF9 is not avaliable on ENCORE database.





18 proteins are bound to TAF9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr56866072568660791-3'-UTR,CDS,intron-Distal3.512874.09885HepG2BCLAF1
chr56864771668647795-3'-UTR,intron-Distal,intron-Proximal5.805189.71079HepG2SUB1
chr56866073968660796-3'-UTR,CDS,intron-Distal3.537154.77875HepG2SUB1
chr56866071668660761-3'-UTR,intron-Distal4.854893.88917K562DDX6
chr56864772368647775-3'-UTR,intron-Distal,intron-Proximal3.666213.02060K562LIN28B
chr56866235768662423-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.507633.90285K562IGF2BP1
chr56866067268660794-3'-UTR,CDS,intron-Distal3.507277.21204K562CPSF6
chr56866067768660739-3'-UTR,intron-Distal4.141448.04249HepG2SUB1
chr56866072468660808-3'-UTR,CDS,intron-Distal3.8582512.21651K562PABPC4
chr56866151868661574-3'-UTR,CDS,intron-Distal3.069893.09884K562LIN28B
chr56866234668662423-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.4024418.13689K562DDX3X
chr56866067468660813-3'-UTR,CDS,intron-Distal3.1591616.00840K562KHSRP
chr56866522268665305-5'-UTR,CDS,intron-Distal,intron-Proximal3.174587.19667HepG2PRPF8
chr56866501168665067-5'-UTR,intron-Distal,intron-Proximal3.426923.22958K562AKAP8L
chr56866524368665315-5'-UTR,CDS,intron-Distal,intron-Proximal3.193853.54074K562RBM15
chr56866528768665304-5'-UTR,CDS,intron-Distal3.505333.74671K562IGF2BP2
chr56866528868665358-5'-UTR,CDS,intron-Distal,intron-Proximal4.0381713.18532K562DDX3X
chr56866500768665058-5'-UTR,intron-Distal,intron-Proximal4.490565.28165K562CSTF2T
chr56866516168665264-5'-UTR,intron-Distal,intron-Proximal3.329383.77385HepG2NCBP2
chr56866087368661093-CDS,intron-Distal,intron-Proximal4.032714.60014HepG2IGF2BP1
chr56866112068661141-CDS,intron-Distal,intron-Proximal3.350099.72633K562YBX3
chr56866099068661051-CDS,intron-Distal,intron-Proximal3.312273.90516K562IGF2BP1
chr56866123568661285-CDS,intron-Distal,intron-Proximal3.790534.53184K562IGF2BP1
chr56866096968661058-CDS,intron-Distal,intron-Proximal3.1912918.51754K562YBX3
chr56866110868661120-CDS,intron-Distal,intron-Proximal3.6099911.53103K562YBX3
chr56866140468661516-CDS,intron-Distal4.0826610.64391K562LIN28B
chr56866120168661235-CDS,intron-Distal,intron-Proximal4.345484.24698K562IGF2BP1
chr56866105868661108-CDS,intron-Distal,intron-Proximal4.5520420.55245K562YBX3
chr56866096168661088-CDS,intron-Distal,intron-Proximal4.7480411.27962K562IGF2BP2
chr56866084068660990-CDS,intron-Distal,intron-Proximal4.9949919.98713K562IGF2BP1
chr56865485968654911-intron-Distal4.580365.37186HepG2ILF3
chr56865244768652482-intron-Distal3.106495.98764HepG2HNRNPC
chr56865243068652447-intron-Distal3.086175.81217HepG2HNRNPC
chr56865485568654911-intron-Distal5.079419.53650K562ILF3
chr56866221068662289-intron-Distal,intron-Proximal4.321663.49003K562PRPF8
chr56866189168661952-intron-Distal3.827803.45805K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TAF9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TAF9 is not available on ENCORE database.

  • 80 RBPs can affect the levels of TAF9.  








The Knockdown/knockout RNA-Seq assay for TAF9 is not available on ENCORE database.





80 RBPs can affect the gene expression of TAF9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TAF9ENSG00000085231.92020.303601683.752100.262803.611302.93330HepG2ACO1
TAF9ENSG00000085231.92243.926702989.58840-0.413908.046706.97520HepG2AUH
TAF9ENSG00000085231.91120.093701746.36040-0.640708.305307.33650HepG2BOP1
TAF9ENSG00000085231.91091.907201603.26770-0.554205.970104.99410HepG2CPSF6
TAF9ENSG00000085231.93301.693202531.219100.383306.630805.71770HepG2CELF1
TAF9ENSG00000085231.92404.223902721.74050-0.179002.344901.65460HepG2DAZAP1
TAF9ENSG00000085231.92042.163601556.322500.391902.667001.40090HepG2DDX27
TAF9ENSG00000085231.92091.825002837.58690-0.439903.459802.77640HepG2DDX6
TAF9ENSG00000085231.92010.694401715.096100.229302.293201.64740HepG2DNAJC21
TAF9ENSG00000085231.91420.149902728.15820-0.9419015.0814013.76830HepG2EIF2S1
TAF9ENSG00000085231.92063.590001680.911700.295802.450801.35300HepG2EIF2S2
TAF9ENSG00000085231.91445.702103015.08880-1.0604016.3923014.84740HepG2EIF4A3
TAF9ENSG00000085231.93239.593802685.113600.270703.792502.84000HepG2EIF4G1
TAF9ENSG00000085231.92113.000001645.276900.360903.740602.77060HepG2EWSR1
TAF9ENSG00000085231.92019.441601583.465200.350803.335002.09520HepG2FASTKD2
TAF9ENSG00000085231.91619.339802237.98970-0.466803.995703.08480HepG2FIP1L1
TAF9ENSG00000085231.9967.155801605.98720-0.731603.017601.95530HepG2FTO
TAF9ENSG00000085231.92016.504203041.63420-0.593006.874005.81420HepG2FXR1
TAF9ENSG00000085231.91891.010202821.80580-0.577505.803804.85460HepG2G3BP1
TAF9ENSG00000085231.91502.728001926.01040-0.358003.210702.47060HepG2HNRNPC
TAF9ENSG00000085231.92065.287202368.90440-0.197902.092301.46220HepG2HNRNPF
TAF9ENSG00000085231.91730.574202856.76420-0.7231011.014609.70330HepG2HNRNPK
TAF9ENSG00000085231.91910.457202332.69640-0.288102.923902.18110HepG2IGF2BP1
TAF9ENSG00000085231.92358.305002868.39080-0.282501.874601.30890HepG2IGF2BP2
TAF9ENSG00000085231.92523.021001954.347400.368408.780907.54800HepG2ILF2
TAF9ENSG00000085231.92305.922903042.69400-0.400003.285002.57080HepG2MAGOH
TAF9ENSG00000085231.92268.622703059.79910-0.431603.408202.71480HepG2MATR3
TAF9ENSG00000085231.92186.121201810.687500.271701.997301.30460HepG2MSI2
TAF9ENSG00000085231.92541.903203131.93590-0.301101.952301.41540HepG2NCBP2
TAF9ENSG00000085231.92328.650002698.86920-0.212902.001801.35030HepG2NOL12
TAF9ENSG00000085231.91886.100402789.47510-0.564605.898304.85710HepG2PABPC4
TAF9ENSG00000085231.91998.956502874.31050-0.5240012.4847011.34330HepG2PCBP1
TAF9ENSG00000085231.9965.609901283.18610-0.410202.806801.99240HepG2PRPF8
TAF9ENSG00000085231.92134.616002924.76100-0.454309.239208.35650HepG2PTBP1
TAF9ENSG00000085231.91999.850902576.29050-0.365403.858603.16750HepG2PUF60
TAF9ENSG00000085231.92012.248603167.49760-0.6545014.5194013.24530HepG2QKI
TAF9ENSG00000085231.93062.027501861.860600.717604.768403.85700HepG2RAVER1
TAF9ENSG00000085231.92340.703403254.94280-0.4757010.604909.67310HepG2NELFE
TAF9ENSG00000085231.92089.619503031.60110-0.5368013.2689012.06990HepG2RECQL
TAF9ENSG00000085231.91124.423101376.02500-0.291302.253201.69260HepG2RPS19
TAF9ENSG00000085231.91447.636601703.85350-0.235102.826702.17680HepG2SAFB2
TAF9ENSG00000085231.92391.890403044.97730-0.348306.061005.24310HepG2SF3B4
TAF9ENSG00000085231.92839.776501910.203300.572003.809402.88660HepG2SNRNP70
TAF9ENSG00000085231.92834.654503178.32830-0.165101.880301.46900HepG2SRSF1
TAF9ENSG00000085231.92648.079301847.192000.519504.119602.87150HepG2SRSF3
TAF9ENSG00000085231.91872.965402327.36390-0.313404.600203.73620HepG2SRSF7
TAF9ENSG00000085231.92523.183702892.89440-0.197302.760902.13960HepG2SUCLG1
TAF9ENSG00000085231.91546.127501109.840800.478203.673702.54540HepG2TFIP11
TAF9ENSG00000085231.92121.117702625.00260-0.307503.108802.22810HepG2TIA1
TAF9ENSG00000085231.91211.480201859.08160-0.6178010.468209.60410HepG2TIAL1
TAF9ENSG00000085231.91445.363101875.72610-0.376006.124605.34370HepG2TRIM56
TAF9ENSG00000085231.91382.60710978.150500.499204.500603.53120HepG2UCHL5
TAF9ENSG00000085231.91581.377301867.10660-0.239602.845902.13850HepG2UPF1
TAF9ENSG00000085231.92464.968701802.621900.451409.365008.36970HepG2UTP3
TAF9ENSG00000085231.95143.032604359.495000.238401.900101.35440K562AKAP8L
TAF9ENSG00000085231.93428.684005426.10350-0.6623011.2733010.20640K562AQR
TAF9ENSG00000085231.92608.615103212.34350-0.300305.203503.87220K562BCLAF1
TAF9ENSG00000085231.91947.894503041.16500-0.642708.740707.14140K562BOP1
TAF9ENSG00000085231.93859.530504519.44580-0.227702.772301.66740K562CPEB4
TAF9ENSG00000085231.92191.600503233.56870-0.561109.220707.77020K562CPSF6
TAF9ENSG00000085231.91913.557002405.80550-0.330303.286002.14080K562DDX3X
TAF9ENSG00000085231.91892.247602520.70100-0.413703.619302.56400K562EFTUD2
TAF9ENSG00000085231.92684.626003290.20000-0.293502.317501.53270K562FMR1
TAF9ENSG00000085231.91963.887602788.79360-0.505905.157203.86640K562FTO
TAF9ENSG00000085231.93103.721102613.926600.247703.110902.47480K562FXR1
TAF9ENSG00000085231.94208.458503101.085900.440403.078602.32600K562G3BP2
TAF9ENSG00000085231.92576.086803087.21250-0.261102.199101.48940K562GPKOW
TAF9ENSG00000085231.92186.665103045.85860-0.478106.510305.63390K562HNRNPC
TAF9ENSG00000085231.94178.241703118.264700.422103.650202.56810K562HNRNPM
TAF9ENSG00000085231.97012.612505139.856000.448105.369204.27690K562HSPD1
TAF9ENSG00000085231.92652.222503285.89240-0.309105.459404.34590K562MTPAP
TAF9ENSG00000085231.92507.159103077.23750-0.295602.742401.76660K562PCBP2
TAF9ENSG00000085231.92830.070803562.07920-0.331902.513101.72150K562PCBP3
TAF9ENSG00000085231.92128.731002732.24180-0.360104.199103.21010K562POLR2G
TAF9ENSG00000085231.92065.571502730.85870-0.402804.480603.28470K562PSIP1
TAF9ENSG00000085231.96446.207207534.69620-0.225102.718801.76800K562PUM2
TAF9ENSG00000085231.96054.111404323.778000.485506.085905.31820K562PUS1
TAF9ENSG00000085231.95175.328304212.576000.296803.995603.29880K562RBM15
TAF9ENSG00000085231.92322.034303222.18460-0.472605.591704.34720K562RBM22
TAF9ENSG00000085231.93065.762903602.47210-0.232702.983502.13920K562SF3A3
TAF9ENSG00000085231.92053.296702936.23020-0.516004.803303.49610K562SF3B1
TAF9ENSG00000085231.92615.898703224.86060-0.301903.397802.44770K562SF3B4
TAF9ENSG00000085231.93126.649103690.79550-0.239304.016802.90970K562SRPK2
TAF9ENSG00000085231.92472.689903293.86600-0.413705.519004.52630K562SRSF1
TAF9ENSG00000085231.92191.596102707.12350-0.304802.966401.86750K562SRSF4
TAF9ENSG00000085231.92648.985503333.75430-0.331702.784802.07570K562TARDBP
TAF9ENSG00000085231.92586.010203215.74390-0.314403.450902.52160K562TIA1
TAF9ENSG00000085231.92080.440602626.67180-0.336302.486301.60430K562TIAL1
TAF9ENSG00000085231.93834.004003006.271200.350802.561501.51510K562U2AF1
TAF9ENSG00000085231.93436.811303871.25860-0.171702.249301.59720K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TAF9 is not available on ENCORE database.





15 RBPs can affect the splicing of TAF9 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETAF9ENSG00000085231.9chr5-686517216865182468651475686516216866232968662422-0.054000.000000.00002excludedK562AQR
SETAF9ENSG00000085231.9chr5-686646516866481468662329686624226866528968665330-0.053000.000020.00262excludedHepG2SFPQ
SETAF9ENSG00000085231.9chr5-686644536866455368662329686624226866499168665143-0.261000.001140.02505excludedK562U2AF1
SETAF9ENSG00000085231.9chr5-686646516866481468662329686624226866528968665330-0.054000.000030.01063excludedHepG2HNRNPUL1
A3SSTAF9ENSG00000085231.9chr5-6866232968662552686623296866242268664651686649890.552000.001140.08848longerK562AGGF1
A3SSTAF9ENSG00000085231.9chr5-6866232968662552686623296866242268664651686649890.294000.000210.02430longerK562AKAP8L
A3SSTAF9ENSG00000085231.9chr5-686609716866158168660971686610146866232968662422-0.054000.000000.00001shorterHepG2SRSF1
A3SSTAF9ENSG00000085231.9chr5-6865172168651951686517216865178068662329686624220.052000.000000.00000longerK562AQR
A3SSTAF9ENSG00000085231.9chr5-6866232968662461686623296866242268665483686658400.416000.000000.00000longerK562AQR
A3SSTAF9ENSG00000085231.9chr5-6866232968662552686623296866242268664651686649890.646000.000000.00000longerK562PUS1
A3SSTAF9ENSG00000085231.9chr5-6866232968662552686623296866242268664651686649890.368000.000000.00130longerK562UTP18
A3SSTAF9ENSG00000085231.9chr5-6866232968662552686623296866242268664453686645100.715000.000080.00531longerK562U2AF1
A3SSTAF9ENSG00000085231.9chr5-686609716866158168660971686610146866232968662422-0.052000.000010.00133shorterK562SRSF1
RITAF9ENSG00000085231.9chr5-6866232968662648686623296866242268662522686626480.127000.014230.07610includedK562PUS1
RITAF9ENSG00000085231.9chr5-6866232968662648686623296866242268662522686626480.291000.000040.00034includedK562AQR
MXETAF9ENSG00000085231.9chr5-6865147568651527686517216865178068646810686480806866232968662422-0.121000.000310.016642includedK562LIN28B
MXETAF9ENSG00000085231.9chr5-68664453686645106866465168664814686623296866242268665289686653300.412000.003630.043991includedK562U2AF2
MXETAF9ENSG00000085231.9chr5-68651721686517806866232968662422686514756865162168665483686658400.093000.000010.000851includedK562TARDBP
MXETAF9ENSG00000085231.9chr5-68651721686517806866232968662422686514756865162168665483686658400.071000.000160.019201includedK562RBM22
MXETAF9ENSG00000085231.9chr5-68651721686517806866232968662422686514756865162168665483686658400.055000.002740.098911includedK562TIA1
MXETAF9ENSG00000085231.9chr5-68651721686517806866232968662422686514756865162168665483686658400.071000.000900.059431includedK562SERBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TAF9 is not avaliable on ENCORE database.