ZNF496

General Information

Gene Name       : ZNF496
Gene ID             : ENSG00000162714.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF496)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF496ENSG00000162714.127.238.627.92ENCSR000AEF
HepG2ZNF496ENSG00000162714.1210.788.919.84ENCSR985KAT
K562ZNF496ENSG00000162714.1225.6321.0523.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF496 is not avaliable on ENCORE database.



Proteins bound to RNA

  • ZNF496 RNA is bound by 24 proteins.  







eCLIP assay for ZNF496 is not avaliable on ENCORE database.





24 proteins are bound to ZNF496 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1247462312247462377-3'-UTR,intron-Distal3.244033.34495K562IGF2BP1
chr1247461929247462005-3'-UTR,intron-Distal4.535656.30939K562IGF2BP1
chr1247462951247463003-3'-UTR,intron-Distal3.518155.05294K562UPF1
chr1247461602247461637-3'-UTR,intron-Distal4.9722416.66765K562PABPC4
chr1247462891247462933-3'-UTR,intron-Distal3.706343.66308K562UPF1
chr1247461514247461565-3'-UTR,intron-Distal4.034513.25872K562IGF2BP1
chr1247461564247461602-3'-UTR,intron-Distal5.332019.39648K562PABPC4
chr1247494733247494839-5'-UTR,intron-Distal,intron-Proximal4.656819.60311HepG2DDX3X
chr1247492840247492918-5'-UTR,CDS,intron-Distal,intron-Proximal4.139044.04622HepG2GRWD1
chr1247494859247494949-5'-UTR,intron-Distal5.367053.85934HepG2DDX3X
chr1247486364247486533-CDS,intron-Distal,intron-Proximal3.785806.80284K562DDX24
chr1247486420247486512-CDS,intron-Distal,intron-Proximal4.705184.67689HepG2PPIG
chr1247471822247471948-CDS,intron-Distal,intron-Proximal3.4230011.64384K562AQR
chr1247464576247464638-CDS,intron-Distal3.736885.48218HepG2SF3B4
chr1247472998247473027-CDS,intron-Distal,intron-Proximal4.4511410.55628K562LIN28B
chr1247472904247473014-CDS,intron-Distal,intron-Proximal3.127147.57294K562PRPF8
chr1247471847247471954-CDS,intron-Distal,intron-Proximal4.222914.22551K562SF3B4
chr1247471776247471828-CDS,intron-Distal,intron-Proximal4.420164.23351K562BUD13
chr1247492005247492158-CDS,intron-Distal,intron-Proximal3.965289.20662K562DDX24
chr1247472980247473032-CDS,intron-Distal,intron-Proximal5.522747.36776HepG2PRPF8
chr1247491916247491989-CDS,intron-Distal,intron-Proximal4.623634.09264K562AQR
chr1247492110247492160-CDS,intron-Distal4.478465.20653K562LIN28B
chr1247471846247471891-CDS,intron-Distal,intron-Proximal3.768996.76307K562LIN28B
chr1247472916247473004-CDS,intron-Distal,intron-Proximal3.085464.86845K562BUD13
chr1247464508247464534-CDS,intron-Distal4.191149.13294K562LIN28B
chr1247492077247492110-CDS,intron-Distal3.045443.09884K562LIN28B
chr1247471768247471879-CDS,intron-Distal,intron-Proximal3.283956.89519HepG2PPIG
chr1247492065247492166-CDS,intron-Distal3.384419.01025HepG2PPIG
chr1247464274247464329-CDS,intron-Distal3.091033.17668K562METAP2
chr1247464475247464508-CDS,intron-Distal4.2874810.31351K562LIN28B
chr1247464485247464547-CDS,intron-Distal3.974463.03355K562METAP2
chr1247481121247481160-intron-Distal3.727016.23177HepG2SUGP2
chr1247480538247480626-intron-Distal4.9961221.48376HepG2SUGP2
chr1247472915247472980-intron-Distal,intron-Proximal3.443396.18341HepG2PRPF8
chr1247480638247480681-intron-Distal5.016548.41240HepG2SUGP2
chr1247474302247474374-intron-Distal4.044974.07352K562KHSRP
chr1247480986247481078-intron-Distal4.0863920.42321HepG2SUGP2
chr1247472914247472957-intron-Distal,intron-Proximal4.9717915.98112K562AQR
chr1247491826247491896-intron-Distal,intron-Proximal3.995623.12843K562PRPF8
chr1247464771247464841-intron-Distal4.013063.01428K562UCHL5
chr1247481651247481704-intron-Distal4.881966.79594HepG2MATR3
chr1247479821247479865-intron-Distal3.022143.05255HepG2SUGP2
chr1247481177247481211-intron-Distal4.987406.71101HepG2HNRNPM
chr1247472957247473001-intron-Distal,intron-Proximal5.4319042.80729K562AQR
chr1247481004247481073-intron-Distal4.433738.58056HepG2MATR3
chr1247480931247481084-intron-Distal4.3685811.19543K562HNRNPM
chr1247480783247480824-intron-Distal4.242218.56181HepG2SUGP2
chr1247471656247471705-intron-Distal,intron-Proximal4.910034.19739K562EIF4G2
chr1247483379247483442-intron-Distal4.272075.41654K562KHSRP
chr1247481395247481470-intron-Distal5.146787.55950K562MATR3
chr1247483569247483671-intron-Distal3.657539.41898K562KHSRP
chr1247471623247471722-intron-Distal,intron-Proximal4.4904311.72355K562TARDBP
chr1247480998247481077-intron-Distal4.689235.76788K562MATR3
chr1247486353247486422-intron-Distal,intron-Proximal4.859265.70963K562RBM22
chr1247472729247472748-intron-Distal4.238343.89565K562PRPF8
chr1247472907247472962-intron-Distal,intron-Proximal4.763437.37772HepG2EFTUD2
chr1247479425247479493-intron-Distal3.275504.66424HepG2HNRNPL
chr1247481310247481373-intron-Distal3.553584.03284K562MATR3
chr1247473124247473182-intron-Distal,intron-Proximal4.776728.54916K562SF3B4
chr1247480565247480624-intron-Distal4.899327.15660HepG2HNRNPM
chr1247479800247479900-intron-Distal3.957133.53404K562HNRNPM
chr1247480824247480875-intron-Distal3.233487.42681HepG2SUGP2
chr1247478902247478982-intron-Distal3.708425.69184HepG2PCBP2
chr1247481560247481598-intron-Distal3.014424.46004HepG2SUGP2
chr1247480212247480253-intron-Distal3.088734.18137HepG2SUGP2
chr1247481922247481985-intron-Distal3.204825.68399HepG2SUGP2
chr1247480567247480618-intron-Distal3.921936.77280K562HNRNPM
chr1247481400247481439-intron-Distal3.097584.40773HepG2SUGP2
chr1247471657247471690-intron-Distal,intron-Proximal4.353733.12843K562PRPF8
chr1247480618247480676-intron-Distal5.377789.47773K562HNRNPM
chr1247480267247480357-intron-Distal4.0264910.98367HepG2SUGP2
chr1247479545247479571-intron-Distal3.056313.58583HepG2HNRNPL
chr1247481553247481605-intron-Distal3.178254.53157HepG2MATR3
chr1247471568247471608-intron-Distal3.844413.56210K562EIF4G2
chr1247493223247493244-intron-Distal,intron-Proximal4.085045.47926K562AQR
chr1247481652247481675-intron-Distal4.506186.07481HepG2SUGP2
chr1247480995247481053-intron-Distal3.248694.53269HepG2HNRNPM
chr1247471515247471602-intron-Distal3.621397.05055K562PRPF8
chr1247481391247481450-intron-Distal3.451923.93186HepG2MATR3
chr1247479493247479545-intron-Distal3.250715.03566HepG2HNRNPL
chr1247480624247480674-intron-Distal5.633969.40914HepG2HNRNPM
chr1247481328247481367-intron-Distal4.285644.31720HepG2MATR3
chr1247471518247471623-intron-Distal5.5310813.42901K562TARDBP
chr1247480566247480632-intron-Distal4.222876.29761HepG2MATR3
chr1247474186247474269-intron-Distal3.627955.38829K562KHSRP
chr1247481171247481213-intron-Distal4.783177.14250K562HNRNPM
chr1247493042247493120-intron-Distal4.127143.02181K562PRPF8
chr1247483442247483553-intron-Distal3.407829.89511K562KHSRP
chr1247482860247482932-intron-Distal3.421357.02852K562KHSRP
chr1247479422247479492-intron-Distal3.339123.84589K562HNRNPL
chr1247481470247481522-intron-Distal4.433173.45817K562MATR3
chr1247472911247472965-intron-Distal,intron-Proximal4.265366.11702K562SF3B4
chr1247481564247481652-intron-Distal4.852257.06647K562MATR3
chr1247472812247472894-intron-Distal3.403418.60356K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF496 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF496 is not available on ENCORE database.

  • 84 RBPs can affect the levels of ZNF496.  








The Knockdown/knockout RNA-Seq assay for ZNF496 is not available on ENCORE database.





84 RBPs can affect the gene expression of ZNF496 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF496ENSG00000162714.8921.170701241.06120-0.430002.434101.55030HepG2ABCF1
ZNF496ENSG00000162714.8830.951101156.26250-0.476607.467606.56850HepG2ACO1
ZNF496ENSG00000162714.81033.762201537.48670-0.572704.620403.95610HepG2AKAP1
ZNF496ENSG00000162714.8920.341601161.65380-0.335903.755302.87500HepG2AKAP8L
ZNF496ENSG00000162714.8632.53520786.76050-0.314802.170001.48160HepG2CALR
ZNF496ENSG00000162714.8876.211801338.58930-0.611403.680702.79260HepG2CNOT7
ZNF496ENSG00000162714.8800.10840557.793500.520404.062303.24380HepG2CPSF6
ZNF496ENSG00000162714.8951.066601126.46570-0.244201.867701.32050HepG2CELF1
ZNF496ENSG00000162714.8532.04100783.39590-0.558205.063404.17430HepG2DDX21
ZNF496ENSG00000162714.8790.006101472.81340-0.8986011.5406010.34270HepG2DDX3X
ZNF496ENSG00000162714.8694.42830998.22530-0.523504.535103.25710HepG2DDX5
ZNF496ENSG00000162714.8893.176901265.13610-0.502303.665502.96280HepG2DDX6
ZNF496ENSG00000162714.8845.977801106.21710-0.386904.507103.67950HepG2DKC1
ZNF496ENSG00000162714.8507.25190830.44690-0.711204.484803.33830HepG2EEF2
ZNF496ENSG00000162714.8810.356801344.11540-0.730007.184306.15410HepG2EIF4A3
ZNF496ENSG00000162714.81001.532301308.64730-0.385901.973601.38590HepG2EIF4B
ZNF496ENSG00000162714.8978.386601194.92940-0.288402.661701.83750HepG2EIF4G1
ZNF496ENSG00000162714.81400.517201144.640400.291002.140501.41830HepG2EIF4G2
ZNF496ENSG00000162714.81126.236801862.77760-0.7259018.3983017.07610HepG2ETF1
ZNF496ENSG00000162714.8915.953601258.00970-0.457803.346702.61980HepG2G3BP1
ZNF496ENSG00000162714.8632.62400821.99230-0.377802.405201.45980HepG2GNB2L1
ZNF496ENSG00000162714.8474.32710695.90150-0.553004.428503.63580HepG2HNRNPA1
ZNF496ENSG00000162714.8880.922101113.08060-0.337503.309002.29920HepG2HNRNPA2B1
ZNF496ENSG00000162714.81070.49420794.409500.430205.086704.15240HepG2HNRNPF
ZNF496ENSG00000162714.8722.827201278.75050-0.823009.866108.67740HepG2IGF2BP2
ZNF496ENSG00000162714.8820.372301204.92720-0.554603.880402.89390HepG2LARP4
ZNF496ENSG00000162714.8863.759401356.56960-0.651306.444605.45360HepG2MAGOH
ZNF496ENSG00000162714.8716.184701364.17190-0.9296010.914509.72250HepG2MATR3
ZNF496ENSG00000162714.8783.105501013.73020-0.372402.847902.02760HepG2MSI2
ZNF496ENSG00000162714.81020.577801396.31360-0.452203.368302.67230HepG2NCBP2
ZNF496ENSG00000162714.8792.729001223.67050-0.626303.436002.43960HepG2PABPC1
ZNF496ENSG00000162714.8973.332001301.69320-0.419405.840505.01070HepG2PCBP1
ZNF496ENSG00000162714.8576.05780857.18950-0.573403.333202.19770HepG2PCBP2
ZNF496ENSG00000162714.8830.17070685.840500.275401.987901.35470HepG2PPIL4
ZNF496ENSG00000162714.8381.54990507.02270-0.410202.176401.45720HepG2PRPF8
ZNF496ENSG00000162714.8987.940101324.52410-0.423005.725704.99620HepG2PTBP1
ZNF496ENSG00000162714.8839.876401146.40590-0.448903.964103.26480HepG2PUF60
ZNF496ENSG00000162714.8896.423701177.72110-0.393705.371604.56440HepG2PUS1
ZNF496ENSG00000162714.81712.605301434.486700.255602.285201.70750HepG2QKI
ZNF496ENSG00000162714.81174.720501556.91770-0.406405.377304.71470HepG2RBM22
ZNF496ENSG00000162714.8912.069201301.89100-0.513405.816104.87040HepG2RBM25
ZNF496ENSG00000162714.81038.740401474.06600-0.505007.973907.13980HepG2NELFE
ZNF496ENSG00000162714.8566.47280812.67720-0.520702.730601.79270HepG2RPS10
ZNF496ENSG00000162714.8530.97140655.96870-0.305001.828001.31820HepG2RPS19
ZNF496ENSG00000162714.8691.32550895.64520-0.373602.555401.78430HepG2RPS2
ZNF496ENSG00000162714.8739.364501344.75890-0.863008.170206.81710HepG2RPS3A
ZNF496ENSG00000162714.8378.58910501.54110-0.405701.993301.31540HepG2RRP9
ZNF496ENSG00000162714.8820.83460684.780100.261402.215801.62810HepG2SAFB2
ZNF496ENSG00000162714.8682.82300798.56350-0.225901.886901.33820HepG2SMN1
ZNF496ENSG00000162714.8669.481401439.37500-1.1043032.9367031.70080HepG2SRSF1
ZNF496ENSG00000162714.8865.691201131.97290-0.386904.357703.60390HepG2SRSF5
ZNF496ENSG00000162714.8955.51920780.501900.291802.462501.80190HepG2SRSF7
ZNF496ENSG00000162714.8860.075101171.00990-0.445206.428905.65020HepG2SRSF9
ZNF496ENSG00000162714.8983.014401526.68710-0.6351013.9334012.96010HepG2SSB
ZNF496ENSG00000162714.8428.87350654.38550-0.609604.166803.36190HepG2SUPV3L1
ZNF496ENSG00000162714.8760.01840588.203300.369602.336301.66310HepG2TARDBP
ZNF496ENSG00000162714.8990.154301480.80730-0.580702.440401.43540HepG2TBRG4
ZNF496ENSG00000162714.8498.82800747.15620-0.582906.192405.49780HepG2TIAL1
ZNF496ENSG00000162714.8788.940901071.68190-0.441903.342602.65800HepG2U2AF1
ZNF496ENSG00000162714.8777.815301002.51800-0.366104.169303.33950HepG2UPF1
ZNF496ENSG00000162714.8858.166801204.53790-0.489102.900601.77250HepG2XPO5
ZNF496ENSG00000162714.8672.00490948.93770-0.497807.282606.27840HepG2ZC3H8
ZNF496ENSG00000162714.8607.421601102.58080-0.8601022.0289020.84650HepG2ZNF622
ZNF496ENSG00000162714.81207.485901534.81690-0.346102.877701.67070K562AARS
ZNF496ENSG00000162714.82508.501703299.88470-0.395604.315003.49380K562AKAP8L
ZNF496ENSG00000162714.82473.175003073.21980-0.313402.707702.12440K562AQR
ZNF496ENSG00000162714.8881.911901107.86370-0.329102.151001.38800K562BOP1
ZNF496ENSG00000162714.83026.209303789.95400-0.324703.921502.48610K562CCDC124
ZNF496ENSG00000162714.83993.308804748.39110-0.249903.092902.06280K562CELF1
ZNF496ENSG00000162714.81081.608401710.50800-0.661206.151904.22980K562EEF2
ZNF496ENSG00000162714.81443.685401192.000300.276302.574501.80590K562EIF3G
ZNF496ENSG00000162714.82537.344801973.584500.362403.605102.67110K562EIF4A3
ZNF496ENSG00000162714.84867.841203861.262800.334104.880703.64980K562EIF4G2
ZNF496ENSG00000162714.8879.661301198.63890-0.446403.817002.80670K562FMR1
ZNF496ENSG00000162714.8740.702201016.02350-0.456003.170402.18660K562FTO
ZNF496ENSG00000162714.81783.704302052.45200-0.202501.835701.32270K562FXR1
ZNF496ENSG00000162714.8918.978901353.23230-0.558304.024903.13250K562G3BP2
ZNF496ENSG00000162714.81866.610802241.32930-0.263902.784901.64130K562GLRX3
ZNF496ENSG00000162714.81135.942701678.66570-0.563407.477406.54180K562HNRNPC
ZNF496ENSG00000162714.82432.486402900.03320-0.253602.699901.81850K562HNRNPU
ZNF496ENSG00000162714.8670.35290960.38390-0.518703.241502.22280K562KRR1
ZNF496ENSG00000162714.81441.192401960.29560-0.443805.259703.93460K562MATR3
ZNF496ENSG00000162714.83184.458404115.61150-0.370104.062002.69310K562MSI2
ZNF496ENSG00000162714.82051.514202356.47150-0.199902.291001.55300K562MTPAP
ZNF496ENSG00000162714.82142.191602749.86290-0.360302.171801.41140K562NAA15
ZNF496ENSG00000162714.81662.840902428.05520-0.546205.448204.27410K562PCBP3
ZNF496ENSG00000162714.81227.053001862.41920-0.602009.613708.15870K562POLR2G
ZNF496ENSG00000162714.81099.853701608.05310-0.548005.876504.78150K562PRPF8
ZNF496ENSG00000162714.81523.904901908.59840-0.324703.198802.49060K562PTBP1
ZNF496ENSG00000162714.83092.046304212.84000-0.446205.432204.29050K562PUF60
ZNF496ENSG00000162714.83653.577804481.64890-0.294703.783102.51790K562PUM1
ZNF496ENSG00000162714.83753.655904390.48290-0.226103.061802.05470K562PUM2
ZNF496ENSG00000162714.82538.425703272.69870-0.366503.083202.51520K562PUS1
ZNF496ENSG00000162714.82501.022203188.65360-0.350404.886104.11890K562RBM15
ZNF496ENSG00000162714.8776.434601069.71080-0.462303.193802.14650K562SF3B1
ZNF496ENSG00000162714.81223.133101556.46940-0.347702.396701.45490K562SUPV3L1
ZNF496ENSG00000162714.82700.849903461.93840-0.358203.657602.63920K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF496 is not available on ENCORE database.





12 RBPs can affect the splicing of ZNF496 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF496ENSG00000162714.8chr1-2474727402474728812474717762474718902474730002474731080.075000.003920.06132includedK562SF3B4
SEZNF496ENSG00000162714.8chr1-2474859992474861072474736252474737582474864552474865230.078000.000480.01150includedK562SF3B4
SEZNF496ENSG00000162714.8chr1-2474733802474735372474730002474731082474736252474737580.077000.000000.00005includedK562AKAP8L
SEZNF496ENSG00000162714.8chr1-2474733802474735372474730002474731082474736252474737580.079000.000020.00085includedHepG2HNRNPK
SEZNF496ENSG00000162714.8chr1-2474712362474713292474607132474645782474717762474771540.140000.000120.00813includedHepG2MATR3
SEZNF496ENSG00000162714.8chr1-2474859992474861072474736252474737582474864552474865320.089000.000800.01883includedK562U2AF1
SEZNF496ENSG00000162714.8chr1-2474727402474728812474717762474718902474730002474731080.066000.001220.08746includedHepG2DDX6
SEZNF496ENSG00000162714.8chr1-247472740247472833247471776247471890247473000247473108-0.081000.000010.01079excludedK562PPIL4
SEZNF496ENSG00000162714.8chr1-2474727402474728812474717762474718902474730002474731080.191000.000020.01590includedHepG2GRSF1
SEZNF496ENSG00000162714.8chr1-2474727402474728332474717762474718902474730002474731080.053000.000010.00062includedK562HNRNPU
SEZNF496ENSG00000162714.8chr1-2474727402474728332474717762474718902474730002474731080.107000.000160.01066includedK562HNRNPK
SEZNF496ENSG00000162714.8chr1-247472740247472881247471776247471890247473000247473108-0.056000.005200.07137excludedK562HNRNPC
A3SSZNF496ENSG00000162714.8chr1-247472740247472881247472740247472833247473000247473108-0.707000.000220.06231shorterK562HNRNPUL1
A3SSZNF496ENSG00000162714.8chr1-2474736252474738002474736252474737582474864552474865320.088000.001300.00878longerK562AQR
A3SSZNF496ENSG00000162714.8chr1-2474920292474921962474920292474921682474924902474928700.068000.003150.01922longerK562AQR
A3SSZNF496ENSG00000162714.8chr1-2474924902474929172474924902474928702474932672474933830.067000.002850.09391longerHepG2U2AF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF496 is not avaliable on ENCORE database.