ZCCHC7

General Information

Gene Name : ZCCHC7
Gene ID : ENSG00000147905.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZCCHC7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZCCHC7	ENSG00000147905.17	70.92	59.62	65.27	ENCSR000AEF
HepG2	ZCCHC7	ENSG00000147905.17	6.43	9.30	7.87	ENCSR985KAT
K562	ZCCHC7	ENSG00000147905.17	37.97	46.35	42.16	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	ZCCHC7-BGRSLV02-RS293		ZCCHC7	Ribo-STAMP-293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
ZCCHC7	Ribo-STAMP-293T	shRNA			ZCCHC7-BGRSLV02-51,ZCCHC7-BGRSLV02-52	NT-BGRSLV02-1,NT-BGRSLV02-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZCCHC7 is not avaliable on ENCORE database.

Proteins bound to RNA

ZCCHC7 RNA is bound by 49 proteins.

CanvasJS.com

eCLIP assay for ZCCHC7 is not avaliable on ENCORE database.

49 proteins are bound to ZCCHC7 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	37206257	37206402	+	intron-Distal	8.29666	85.38575	HepG2	PCBP2
chr9	37200222	37200238	+	intron-Distal	6.37585	54.03608	K562	PTBP1
chr9	37200238	37200269	+	intron-Distal	6.74521	48.14362	K562	PTBP1
chr9	37178999	37179019	+	intron-Distal	5.37113	42.28880	K562	KHSRP
chr9	37154314	37154373	+	intron-Distal	5.57851	41.40040	K562	KHSRP
chr9	37188944	37188992	+	intron-Distal	7.49197	40.72404	HepG2	PCBP2
chr9	37179034	37179111	+	intron-Distal	4.86810	38.89932	K562	KHSRP
chr9	37179019	37179034	+	intron-Distal	5.13593	32.19198	K562	KHSRP
chr9	37188992	37189020	+	intron-Distal	6.77544	31.56042	K562	ILF3
chr9	37189183	37189243	+	intron-Distal	6.60385	29.67330	K562	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 308 entries

eCLIP assay for ZCCHC7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZCCHC7 is not available on ENCORE database.
55 RBPs can affect the levels of ZCCHC7.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZCCHC7 is not available on ENCORE database.

55 RBPs can affect the gene expression of ZCCHC7 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZCCHC7	ENSG00000147905.13	144.42050	339.01970	-1.23110	14.18800	12.83880	HepG2	UPF1
ZCCHC7	ENSG00000147905.13	231.75390	575.96910	-1.31340	13.67210	12.34690	HepG2	MATR3
ZCCHC7	ENSG00000147905.13	1308.32740	2062.23030	-0.65650	10.73620	9.35270	K562	SRSF1
ZCCHC7	ENSG00000147905.13	1454.83030	2160.95960	-0.57080	8.56730	6.84210	K562	MATR3
ZCCHC7	ENSG00000147905.13	275.22010	513.56620	-0.90000	7.47130	6.53300	HepG2	EIF2S1
ZCCHC7	ENSG00000147905.13	288.04640	531.19010	-0.88290	7.39790	6.33400	HepG2	G3BP1
ZCCHC7	ENSG00000147905.13	1232.69710	1698.45610	-0.46240	7.04950	6.14480	K562	FXR1
ZCCHC7	ENSG00000147905.13	3403.83140	2662.78250	0.35410	6.46500	5.52670	K562	DDX47
ZCCHC7	ENSG00000147905.13	355.41600	550.59620	-0.63150	6.08910	5.45440	HepG2	SRSF1
ZCCHC7	ENSG00000147905.13	338.57970	589.55500	-0.80010	6.39170	5.44510	HepG2	NCBP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 65 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZCCHC7 is not available on ENCORE database.

16 RBPs can affect the splicing of ZCCHC7 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	ZCCHC7	ENSG00000147905.13	chr9	+	37126277	37126315			37126308	37126315	37120535	37120620	0.11700	0.00000	0.00000	longer	K562	AQR
MXE	ZCCHC7	ENSG00000147905.13	chr9	+	37327795	37327831	37349353	37349449	37305540	37305711	37354706	37354821	0.12900	0.00000	0.00032	1included	K562	LIN28B
MXE	ZCCHC7	ENSG00000147905.13	chr9	+	37305540	37305711	37327795	37327831	37304184	37304310	37349353	37349449	-0.11900	0.00000	0.00009	2included	K562	UTP3
MXE	ZCCHC7	ENSG00000147905.13	chr9	+	37305506	37305711	37327795	37327831	37304184	37304310	37349353	37349449	0.08000	0.00000	0.00002	1included	K562	AQR
MXE	ZCCHC7	ENSG00000147905.13	chr9	+	37327795	37327831	37349353	37349449	37305540	37305711	37354706	37354821	0.13300	0.00000	0.00017	1included	K562	LARP7
MXE	ZCCHC7	ENSG00000147905.13	chr9	+	37327795	37327831	37349353	37349449	37305540	37305711	37354706	37354821	0.12400	0.00000	0.00046	1included	K562	PHF6
MXE	ZCCHC7	ENSG00000147905.13	chr9	+	37327771	37327831	37354706	37354821	37305540	37305711	37356831	37357563	0.06100	0.00001	0.00019	1included	K562	AQR
SE	ZCCHC7	ENSG00000147905.13	chr9	+	37126308	37126939			37120535	37120620	37302184	37302228	-0.07500	0.00003	0.00148	excluded	K562	RBM15
MXE	ZCCHC7	ENSG00000147905.13	chr9	+	37327771	37327831	37349353	37349449	37305540	37305711	37354706	37354821	0.06600	0.00003	0.00043	1included	K562	AQR
MXE	ZCCHC7	ENSG00000147905.13	chr9	+	37302184	37302228	37304184	37304310	37126308	37126939	37305540	37305711	-0.23600	0.00004	0.00056	2included	HepG2	U2AF2

Showing 1 to 10 of 23 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZCCHC7

General Information

Functions

Localization

Domains (AlphaFold: ZCCHC7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZCCHC7 is not avaliable on ENCORE database.

49 proteins are bound to ZCCHC7 RNA:

eCLIP assay for ZCCHC7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZCCHC7 is not available on ENCORE database.

55 RBPs can affect the gene expression of ZCCHC7 :

The Knockdown/knockout RNA-Seq assay for ZCCHC7 is not available on ENCORE database.

16 RBPs can affect the splicing of ZCCHC7 :

The Knockdown/knockout RNA-Seq assay for ZCCHC7 is not avaliable on ENCORE database.