YDJC

General Information

Gene Name       : YDJC
Gene ID             : ENSG00000161179.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: YDJC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878YDJCENSG00000161179.131.345.693.52ENCSR000AEF
HepG2YDJCENSG00000161179.1313.676.8910.28ENCSR985KAT
K562YDJCENSG00000161179.13115.0071.5893.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for YDJC is not avaliable on ENCORE database.



Proteins bound to RNA
  • YDJC RNA is bound by 28 proteins.  







eCLIP assay for YDJC is not avaliable on ENCORE database.





28 proteins are bound to YDJC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr222198277021982809-3'-UTR,CDS,intron-Distal3.259153.97676K562LIN28B
chr222198276921982785-3'-UTR,CDS,intron-Distal5.3436342.33502K562RBM15
chr222198262021982650-3'-UTR,intron-Distal3.8934512.33937K562YBX3
chr222198247021982515-3'-UTR,intron-Distal3.086477.45155K562UPF1
chr222198287821982884-3'-UTR,CDS,intron-Distal4.4374619.84863K562RBM15
chr222198241021982440-3'-UTR,intron-Distal,intron-Proximal3.099749.61156K562YBX3
chr222198285321982878-3'-UTR,CDS,intron-Distal4.9423640.25818K562RBM15
chr222198307521983161-3'-UTR,CDS,intron-Distal4.5580013.15302K562HNRNPK
chr222198283621982884-3'-UTR,CDS,intron-Distal3.128067.54071K562PABPC4
chr222198299421983027-3'-UTR,CDS,intron-Distal3.765535.57795K562DHX30
chr222198262321982657-3'-UTR,intron-Distal3.315295.75907K562PABPC4
chr222198255321982594-3'-UTR,intron-Distal3.1236911.04431K562DDX55
chr222198255221982590-3'-UTR,intron-Distal3.005495.44498K562UPF1
chr222198267321982730-3'-UTR,CDS,intron-Distal3.7753429.94393K562PABPC4
chr222198274821982786-3'-UTR,CDS,intron-Distal4.793124.74403K562PUM1
chr222198302821983082-3'-UTR,CDS,intron-Distal5.7415845.82255K562AQR
chr222198283521982845-3'-UTR,CDS,intron-Distal4.1104925.39544K562RBM15
chr222198285021982871-3'-UTR,CDS,intron-Distal3.728654.19414K562FXR2
chr222198256221982603-3'-UTR,intron-Distal4.481985.85471K562NOLC1
chr222198240421982453-3'-UTR,intron-Distal,intron-Proximal3.4800625.70899K562PABPC4
chr222198271721982786-3'-UTR,CDS,intron-Distal4.6129421.68731K562PCBP1
chr222198255321982605-3'-UTR,intron-Distal4.1337037.33914K562PABPC4
chr222198306721983131-3'-UTR,CDS,intron-Distal3.5530822.77536K562SF3B4
chr222198300021983043-3'-UTR,CDS,intron-Distal5.4455119.42899K562RBM15
chr222198278521982820-3'-UTR,CDS,intron-Distal4.9405840.75895K562RBM15
chr222198307521983135-3'-UTR,CDS,intron-Distal5.126017.19196HepG2SF3B4
chr222198242821982451-3'-UTR,intron-Distal5.6096910.81337K562UPF1
chr222198242021982472-3'-UTR,intron-Distal4.175008.50740HepG2SUB1
chr222198275621982769-3'-UTR,CDS,intron-Distal4.7822034.55608K562RBM15
chr222198261121982623-3'-UTR,intron-Distal4.068985.76576K562PABPC4
chr222198284521982853-3'-UTR,CDS,intron-Distal4.6964538.19618K562RBM15
chr222198263221982775-3'-UTR,CDS,intron-Distal3.103379.06526K562HNRNPK
chr222198266321982738-3'-UTR,CDS,intron-Distal3.0000320.54095K562DDX55
chr222198426021984313-5'-UTR,CDS,intron-Distal,intron-Proximal4.0722124.47417K562DDX3X
chr222198334421983408-5'-UTR,CDS,intron-Distal3.111069.20562K562FXR2
chr222198342921983557-5'-UTR,CDS,intron-Distal,intron-Proximal3.384327.66017HepG2PRPF8
chr222198345421983591-5'-UTR,CDS,intron-Distal,intron-Proximal5.6454912.27819HepG2AQR
chr222198343121983586-5'-UTR,CDS,intron-Distal,intron-Proximal3.5847855.51431K562PRPF8
chr222198333721983419-5'-UTR,CDS,intron-Distal4.0332726.27149K562DHX30
chr222198344321983531-5'-UTR,CDS,intron-Distal,intron-Proximal5.0112449.34824K562AQR
chr222198344421983475-5'-UTR,CDS,intron-Distal3.159975.06229K562PHF6
chr222198343621983560-5'-UTR,CDS,intron-Distal,intron-Proximal3.312016.78376HepG2EFTUD2
chr222198343721983482-5'-UTR,CDS,intron-Distal,intron-Proximal3.095766.34887K562DGCR8
chr222198386721983885-CDS,intron-Distal,intron-Proximal4.2823214.99822K562RBM15
chr222198404421984090-CDS,intron-Distal,intron-Proximal3.448429.20570K562SF3B4
chr222198419421984245-CDS,intron-Distal4.6655433.17330K562PCBP1
chr222198402921984101-CDS,intron-Distal,intron-Proximal3.1739212.04351K562BUD13
chr222198385621983867-CDS,intron-Distal,intron-Proximal3.5584711.92577K562RBM15
chr222198415221984167-CDS,intron-Distal3.077875.59529K562PCBP1
chr222198388421983937-CDS,intron-Distal,intron-Proximal3.4321922.55100K562GEMIN5
chr222198416721984194-CDS,intron-Distal4.0757031.35132K562PCBP1
chr222198388521983898-CDS,intron-Distal,intron-Proximal3.8756913.34048K562RBM15
chr222198418721984283-CDS,intron-Distal4.3925235.51186K562GEMIN5
chr222198367121983746-CDS,intron-Distal,intron-Proximal3.9484219.26352K562SF3B4
chr222198414421984192-CDS,intron-Distal,intron-Proximal3.1422910.92013K562RPS3
chr222198379121983920-CDS,intron-Distal,intron-Proximal3.626695.35682HepG2GRWD1
chr222198379021983931-CDS,intron-Distal,intron-Proximal3.230386.40230HepG2SRSF1
chr222198414121984225-CDS,intron-Distal,intron-Proximal5.105277.46114HepG2DDX3X
chr222198421921984234-CDS,intron-Distal4.1666823.90396K562DDX3X
chr222198384221983900-CDS,intron-Distal,intron-Proximal3.766056.44064K562LIN28B
chr222198423421984259-CDS,intron-Distal4.2273726.21663K562DDX3X
chr222198414621984219-CDS,intron-Distal,intron-Proximal3.1057821.16521K562DDX3X
chr222198308221983104-intron-Distal5.0157639.14393K562AQR
chr222198352021983568-intron-Distal,intron-Proximal3.176885.86528K562TROVE2
chr222198355121983588-intron-Distal,intron-Proximal6.3890840.02799K562AQR
chr222198353121983551-intron-Distal,intron-Proximal5.3823523.24217K562AQR
chr222198352121983548-intron-Distal,intron-Proximal3.436243.48391K562SMNDC1
chr222198325321983283-intron-Distal,intron-Proximal5.4469364.76455K562AQR
chr222198358821983596-intron-Distal,intron-Proximal6.0700323.03048K562AQR
chr222198353321983562-intron-Distal,intron-Proximal4.0135612.03308K562RBM15
chr222198310421983128-intron-Distal3.380918.67757K562AQR
chr222198351721983574-intron-Distal,intron-Proximal3.1343316.39987K562BUD13
chr222198328321983293-intron-Distal,intron-Proximal5.0687646.16605K562AQR
chr222198349121983553-intron-Distal,intron-Proximal3.999247.02425K562LSM11
chr222198329321983299-intron-Distal,intron-Proximal5.0244842.31252K562AQR
chr222198322721983253-intron-Distal,intron-Proximal5.4695525.49678K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for YDJC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for YDJC is not available on ENCORE database.

  • 88 RBPs can affect the levels of YDJC.  








The Knockdown/knockout RNA-Seq assay for YDJC is not available on ENCORE database.





88 RBPs can affect the gene expression of YDJC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
YDJCENSG00000161179.9209.54350140.989500.571601.809201.36910HepG2AKAP1
YDJCENSG00000161179.9220.37240116.066600.924903.592002.89540HepG2DDX6
YDJCENSG00000161179.974.68990139.39210-0.900203.205802.33240HepG2EIF4G2
YDJCENSG00000161179.9464.21640344.444700.430402.838702.23130HepG2ETF1
YDJCENSG00000161179.9295.35930185.645900.669804.076803.06330HepG2EWSR1
YDJCENSG00000161179.952.91410123.93400-1.227802.939301.89100HepG2FTO
YDJCENSG00000161179.973.41500141.91620-0.950904.044303.10160HepG2FUBP3
YDJCENSG00000161179.9206.90030124.400200.733801.996401.40440HepG2FXR1
YDJCENSG00000161179.9186.42880117.219100.669302.516501.86930HepG2IGF2BP2
YDJCENSG00000161179.9314.93960124.444101.3395010.657309.39710HepG2MAGOH
YDJCENSG00000161179.9290.04230125.122201.212802.359701.77380HepG2MATR3
YDJCENSG00000161179.971.86830154.09150-1.100404.649703.07810HepG2NAA15
YDJCENSG00000161179.9234.81090128.054500.874604.025303.26660HepG2NCBP2
YDJCENSG00000161179.953.91120118.67700-1.138403.827302.94990HepG2NSUN2
YDJCENSG00000161179.9249.22210104.747801.2504010.795609.72350HepG2PCBP1
YDJCENSG00000161179.9122.0907070.727600.787503.013702.24780HepG2PPIL4
YDJCENSG00000161179.973.32090119.54290-0.705202.570601.82240HepG2PRPF4
YDJCENSG00000161179.9198.75680106.584400.898903.073802.50280HepG2PTBP1
YDJCENSG00000161179.9284.55760148.204100.941009.213408.26420HepG2PUM1
YDJCENSG00000161179.9245.57000148.084100.729604.543803.69470HepG2PUM2
YDJCENSG00000161179.9402.16230287.889100.482203.110502.56950HepG2RBM22
YDJCENSG00000161179.9238.0105091.274301.382608.514706.77000HepG2RBM27
YDJCENSG00000161179.9144.7911074.119300.966003.313702.15140HepG2RCC2
YDJCENSG00000161179.9239.44590118.618501.013306.594205.81900HepG2NELFE
YDJCENSG00000161179.9170.10850110.476400.622602.463701.87810HepG2RECQL
YDJCENSG00000161179.9110.8834061.674400.846202.325301.75650HepG2RPS19
YDJCENSG00000161179.9140.4359084.169300.738402.128701.42180HepG2RPS2
YDJCENSG00000161179.9161.0934085.929200.906603.387802.19680HepG2RPS5
YDJCENSG00000161179.9295.01850185.882200.666302.842002.15790HepG2SF3A3
YDJCENSG00000161179.9125.2360082.358000.604601.993601.43330HepG2SMN1
YDJCENSG00000161179.9124.4265064.127200.956203.573602.47060HepG2SMNDC1
YDJCENSG00000161179.966.65690147.40590-1.145004.110103.14830HepG2SNRNP70
YDJCENSG00000161179.9200.01940137.851400.536902.742802.11870HepG2SRSF5
YDJCENSG00000161179.9172.83070282.30280-0.707905.056304.40390HepG2SSB
YDJCENSG00000161179.9245.96920156.755600.649904.442403.68920HepG2SUCLG1
YDJCENSG00000161179.9135.7961077.740200.804603.390102.78000HepG2TRIM56
YDJCENSG00000161179.9202.65360136.408300.571002.639901.78770HepG2TUFM
YDJCENSG00000161179.9125.13820193.98530-0.632401.945001.40770HepG2U2AF1
YDJCENSG00000161179.9277.72430159.155000.803102.840102.23700HepG2UTP3
YDJCENSG00000161179.92117.062102657.85260-0.328202.734501.51980K562ABCF1
YDJCENSG00000161179.93777.147102668.885400.5010013.0969011.95910K562AGGF1
YDJCENSG00000161179.92525.750304507.48570-0.835605.269604.50490K562AQR
YDJCENSG00000161179.94156.605902913.862900.5124010.852608.89470K562ATP5C1
YDJCENSG00000161179.92244.456101503.416600.578002.488301.58100K562BCLAF1
YDJCENSG00000161179.9710.743801157.75900-0.703907.733506.24690K562BOP1
YDJCENSG00000161179.92268.676001482.847900.613404.709203.25360K562CCAR1
YDJCENSG00000161179.92663.655103189.44190-0.259902.489501.38270K562CCDC124
YDJCENSG00000161179.94437.444403297.676900.428205.341003.76430K562CPEB4
YDJCENSG00000161179.9914.668401231.02050-0.428504.457503.46310K562CPSF6
YDJCENSG00000161179.93889.422103411.987100.188802.290301.68840K562DDX47
YDJCENSG00000161179.93517.804202988.318400.235202.913602.01250K562DKC1
YDJCENSG00000161179.91001.22500643.237100.638208.382107.00230K562EIF3G
YDJCENSG00000161179.92354.416801910.676400.301202.456201.65890K562FIP1L1
YDJCENSG00000161179.9648.110401252.55260-0.9506014.1863012.17690K562FMR1
YDJCENSG00000161179.9617.851401061.65930-0.781008.551806.84610K562FTO
YDJCENSG00000161179.9392.26970568.65140-0.535702.893601.51890K562FUS
YDJCENSG00000161179.9114.13130481.70600-2.0775015.4187013.43540K562G3BP2
YDJCENSG00000161179.9878.743901175.31400-0.419503.624202.72000K562GPKOW
YDJCENSG00000161179.96262.308703855.905200.699506.409705.25180K562GRSF1
YDJCENSG00000161179.91563.304002433.71090-0.638603.066601.40550K562HNRNPAB
YDJCENSG00000161179.91707.85430941.357800.859302.607001.62140K562IGF2BP2
YDJCENSG00000161179.91370.83320957.252300.518004.813803.15190K562IGF2BP3
YDJCENSG00000161179.91094.509902373.60990-1.116809.942707.27690K562ILF2
YDJCENSG00000161179.9506.408101003.59160-0.986809.842407.96260K562KRR1
YDJCENSG00000161179.92291.18650988.746201.2123031.7408028.74300K562MAGOH
YDJCENSG00000161179.91684.987902314.17430-0.457802.486501.66040K562NAA15
YDJCENSG00000161179.91409.458202121.73520-0.590104.083202.57300K562NCBP2
YDJCENSG00000161179.93266.630104214.43810-0.367504.931903.97560K562NSUN2
YDJCENSG00000161179.91303.698402498.45480-0.938408.128006.02040K562PABPC1
YDJCENSG00000161179.91055.497202367.42410-1.165406.523605.24340K562PCBP3
YDJCENSG00000161179.9957.800001815.78160-0.922807.577206.27680K562POLR2G
YDJCENSG00000161179.93761.710202169.090700.7942013.8389011.57570K562PPIG
YDJCENSG00000161179.91338.830702313.57890-0.789206.950004.07430K562PPIL4
YDJCENSG00000161179.92414.05780960.672501.3292016.7252015.15860K562PTBP1
YDJCENSG00000161179.9729.43310538.642500.437303.475601.44250K562QKI
YDJCENSG00000161179.93270.304502683.472100.285203.578702.91830K562RBM15
YDJCENSG00000161179.91432.94790920.851300.637807.926306.40830K562RBM22
YDJCENSG00000161179.91304.97940897.898400.539303.088201.59310K562RBM34
YDJCENSG00000161179.91141.905102319.54230-1.022408.618805.71660K562RPS3A
YDJCENSG00000161179.91031.01840540.077500.932703.561702.41130K562RPS3
YDJCENSG00000161179.91198.486901672.93580-0.481203.552001.90330K562SDAD1
YDJCENSG00000161179.92623.970804159.04780-0.664506.426905.22630K562SF3A3
YDJCENSG00000161179.9603.375901117.79310-0.889505.091803.74990K562SF3B1
YDJCENSG00000161179.9737.03500500.501700.558303.439002.48150K562SF3B4
YDJCENSG00000161179.93483.061004261.07690-0.290902.992102.02470K562SRPK2
YDJCENSG00000161179.91371.28010941.844900.541906.587005.50630K562SRSF1
YDJCENSG00000161179.91279.64840521.200201.2957022.3374019.14860K562SRSF4
YDJCENSG00000161179.91564.39280889.663700.814205.243303.71380K562SRSF5
YDJCENSG00000161179.91415.225102506.83140-0.8248013.5711010.47520K562SSRP1
YDJCENSG00000161179.91626.490302292.75920-0.495304.614602.92280K562STAU1
YDJCENSG00000161179.9150.06940472.81880-1.655703.972002.09010K562TAF15
YDJCENSG00000161179.91757.57590953.067200.8828013.7414011.93510K562TARDBP
YDJCENSG00000161179.9325.69260501.74980-0.623504.198002.20250K562TBRG4
YDJCENSG00000161179.91921.16190919.378101.0631025.6714022.98160K562TIA1
YDJCENSG00000161179.91399.72850902.517600.633007.693305.63890K562TRA2A
YDJCENSG00000161179.9296.21700466.49350-0.655202.495301.46680K562U2AF1
YDJCENSG00000161179.9222.11800481.92890-1.117509.543308.04670K562U2AF2
YDJCENSG00000161179.93399.079304468.68320-0.394704.636003.73120K562UPF1
YDJCENSG00000161179.92593.075103823.67010-0.560305.577704.31490K562WDR3
YDJCENSG00000161179.92578.882103976.45540-0.624702.772101.92530K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for YDJC is not available on ENCORE database.





17 RBPs can affect the splicing of YDJC :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEYDJCENSG00000161179.9chr22-219832982198347621982377219830762198359621983696-0.226000.000340.07801excludedK562WDR43
SEYDJCENSG00000161179.9chr22-219832982198347621982377219830762198359621983696-0.199000.000920.01136excludedK562AQR
SEYDJCENSG00000161179.9chr22-219832982198347621982377219830762198359621983696-0.551000.000000.00000excludedK562FXR1
A5SSYDJCENSG00000161179.9chr22-2198383121984050219838902198405021983596219836960.222000.000000.00039longerK562FXR1
RIYDJCENSG00000161179.9chr22-219835962198405021983596219836962198383121984050-0.235000.000160.01972excludedK562NONO
RIYDJCENSG00000161179.9chr22-2198359621984050219835962198369621983890219840500.091000.000370.01162includedK562HNRNPC
RIYDJCENSG00000161179.9chr22-2198359621984050219835962198369621983831219840500.255000.000110.00669includedK562SF3B1
RIYDJCENSG00000161179.9chr22-219832982198369621983298219834762198359621983696-0.502000.000010.00484excludedK562IGF2BP2
RIYDJCENSG00000161179.9chr22-2198359621984050219835962198369621983890219840500.147000.000840.04304includedK562NCBP2
RIYDJCENSG00000161179.9chr22-2198329821983696219832982198347621983596219836960.555000.000000.00000includedK562NCBP2
RIYDJCENSG00000161179.9chr22-219835962198405021983596219836962198383121984050-0.123000.001810.05519excludedK562HNRNPUL1
RIYDJCENSG00000161179.9chr22-219835962198405021983596219836962198383121984050-0.204000.000740.06719excludedK562UCHL5
RIYDJCENSG00000161179.9chr22-219832982198369621983298219834762198359621983696-0.266000.000000.00001excludedK562AGGF1
RIYDJCENSG00000161179.9chr22-219835962198405021983596219836962198383121984050-0.230000.000370.03965excludedK562XRN2
RIYDJCENSG00000161179.9chr22-2198359621984050219835962198369621983890219840500.172000.004910.07861includedK562RBM22
RIYDJCENSG00000161179.9chr22-219832982198369621983298219834762198359621983696-0.208000.000180.00255excludedK562AKAP8L
RIYDJCENSG00000161179.9chr22-219832982198405021983298219836962198389021984050-0.128000.000470.00587excludedK562AKAP8L
RIYDJCENSG00000161179.9chr22-219832982198369621983298219834762198359621983696-0.188000.001250.01542excludedK562RBM15
RIYDJCENSG00000161179.9chr22-219835962198405021983596219836962198389021984050-0.139000.006100.05721excludedK562RBM15
RIYDJCENSG00000161179.9chr22-2198329821983696219832982198347621983596219836960.217000.000180.04876includedK562DDX24
RIYDJCENSG00000161179.9chr22-2198359621984050219835962198369621983831219840500.273000.000010.00281includedK562WDR43
RIYDJCENSG00000161179.9chr22-2198329821983696219832982198347621983596219836960.295000.000010.00391includedK562PUM1
RIYDJCENSG00000161179.9chr22-2198359621984050219835962198369621983831219840500.145000.000020.00864includedK562PUM1
RIYDJCENSG00000161179.9chr22-2198329821983696219832982198347621983596219836960.299000.000000.00000includedK562AQR
RIYDJCENSG00000161179.9chr22-2198329821984050219832982198369621983890219840500.106000.000740.00517includedK562AQR
RIYDJCENSG00000161179.9chr22-2198359621984050219835962198369621983890219840500.270000.000000.00000includedK562FXR1
RIYDJCENSG00000161179.9chr22-2198329821983696219832982198347621983596219836960.339000.000000.00001includedK562FXR1
MXEYDJCENSG00000161179.9chr22-2198359621983696219838902198405021982380219830762198413921984325-0.290000.000530.048402includedK562PUM1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for YDJC is not avaliable on ENCORE database.