TRIM59

General Information

Gene Name : TRIM59
Gene ID : ENSG00000213186.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRIM59)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRIM59	ENSG00000213186.7	22.97	20.07	21.52	ENCSR000AEF
HepG2	TRIM59	ENSG00000213186.7	1.08	1.15	1.11	ENCSR985KAT
K562	TRIM59	ENSG00000213186.7	21.52	23.91	22.71	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRIM59 is not avaliable on ENCORE database.

Proteins bound to RNA

TRIM59 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for TRIM59 is not avaliable on ENCORE database.

10 proteins are bound to TRIM59 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	160153401	160153462	-	3'-UTR,intron-Distal	3.07052	11.95405	K562	KHSRP
chr3	160156882	160156927	-	CDS,intron-Distal	5.41375	8.53052	K562	RBM15
chr3	160156652	160156739	-	CDS,intron-Distal,intron-Proximal	3.07335	8.52200	K562	ZNF622
chr3	160156778	160156846	-	CDS,intron-Distal,intron-Proximal	3.14408	6.56546	K562	RBM15
chr3	160167504	160167567	-	5'-UTR,intron-Distal,intron-Proximal	4.18596	6.42503	K562	DDX3X
chr3	160156069	160156141	-	CDS,intron-Distal	4.31012	5.48535	K562	GRWD1
chr3	160153342	160153441	-	3'-UTR,intron-Distal	4.38511	5.23751	K562	TIA1
chr3	160156688	160156732	-	CDS,intron-Distal,intron-Proximal	4.02533	4.80676	K562	RBM15
chr3	160167447	160167505	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.74336	4.00320	K562	AQR
chr3	160154523	160154592	-	3'-UTR,intron-Distal	3.80053	3.81071	K562	HNRNPC
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 14 entries

eCLIP assay for TRIM59 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRIM59 is not available on ENCORE database.
73 RBPs can affect the levels of TRIM59.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TRIM59 is not available on ENCORE database.

73 RBPs can affect the gene expression of TRIM59 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRIM59	ENSG00000213186.3	7157.58640	1630.38940	2.13420	92.26090	89.03660	K562	PUS1
TRIM59	ENSG00000213186.3	3619.62960	1580.13010	1.19570	63.30450	60.66500	K562	AGGF1
TRIM59	ENSG00000213186.3	1037.55420	2328.77400	-1.16640	21.96660	19.06520	K562	RPS3
TRIM59	ENSG00000213186.3	3722.75190	1588.76410	1.22840	20.22420	18.57850	K562	RBM15
TRIM59	ENSG00000213186.3	3161.79980	1644.23000	0.94320	19.97770	17.90590	K562	AKAP8L
TRIM59	ENSG00000213186.3	1137.19550	1870.15320	-0.71770	17.72310	16.20130	K562	DDX47
TRIM59	ENSG00000213186.3	518.48370	1096.07090	-1.08000	13.60700	11.77260	K562	RPS19
TRIM59	ENSG00000213186.3	947.28460	1870.65070	-0.98170	11.22940	10.09660	K562	FXR1
TRIM59	ENSG00000213186.3	3192.68040	1075.15270	1.57010	13.05680	9.82030	K562	HNRNPA2B1
TRIM59	ENSG00000213186.3	3669.74430	939.76200	1.96520	11.35610	8.87050	K562	PABPN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 78 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRIM59 is not available on ENCORE database.

17 RBPs can affect the splicing of TRIM59 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	-0.34300	0.00000	0.00015	excluded	K562	WDR3
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	0.55600	0.00000	0.00000	included	K562	FXR1
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	-0.41000	0.00000	0.00000	excluded	K562	PUS1
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	-0.34900	0.00000	0.00034	excluded	K562	HNRNPUL1
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	-0.27800	0.00000	0.00002	excluded	K562	RBM15
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	-0.32800	0.00000	0.00000	excluded	K562	AGGF1
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	0.33400	0.00000	0.00221	included	K562	NCBP2
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	-0.31300	0.00000	0.00296	excluded	K562	NPM1
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	0.26800	0.00001	0.00167	included	K562	XRCC6
SE	TRIM59	ENSG00000213186.3	chr3	-	160166513	160166583	160156636	160156974	160167504	160167617	-0.32800	0.00002	0.00775	excluded	K562	LARP4

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRIM59

General Information

Functions

Localization

Domains (AlphaFold: TRIM59)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRIM59 is not avaliable on ENCORE database.

10 proteins are bound to TRIM59 RNA:

eCLIP assay for TRIM59 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRIM59 is not available on ENCORE database.

73 RBPs can affect the gene expression of TRIM59 :

The Knockdown/knockout RNA-Seq assay for TRIM59 is not available on ENCORE database.

17 RBPs can affect the splicing of TRIM59 :

The Knockdown/knockout RNA-Seq assay for TRIM59 is not avaliable on ENCORE database.