TMOD3

General Information

Gene Name : TMOD3
Gene ID : ENSG00000138594.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TMOD3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TMOD3	ENSG00000138594.13	15.55	15.92	15.73	ENCSR000AEF
HepG2	TMOD3	ENSG00000138594.13	8.84	14.16	11.50	ENCSR985KAT
K562	TMOD3	ENSG00000138594.13	18.97	20.80	19.88	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TMOD3 is not avaliable on ENCORE database.

Proteins bound to RNA

TMOD3 RNA is bound by 20 proteins.

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eCLIP assay for TMOD3 is not avaliable on ENCORE database.

20 proteins are bound to TMOD3 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	52176838	52176848	+	intron-Distal	5.11133	400.00000	K562	TIA1
chr15	52176809	52176851	+	intron-Distal	8.21792	400.00000	K562	TROVE2
chr15	52176821	52176838	+	intron-Distal	5.11133	400.00000	K562	TIA1
chr15	52176813	52176851	+	intron-Distal	5.62207	36.97753	HepG2	TROVE2
chr15	52204202	52204257	+	3'-UTR,intron-Distal	5.49156	19.61215	K562	PUM2
chr15	52202204	52202281	+	3'-UTR,intron-Distal	3.77028	18.55027	K562	FAM120A
chr15	52176842	52176853	+	intron-Distal	3.12677	18.21107	K562	IGF2BP1
chr15	52176822	52176839	+	intron-Distal	3.12677	18.21107	K562	IGF2BP1
chr15	52191006	52191110	+	intron-Distal	6.31708	17.70285	K562	PTBP1
chr15	52203213	52203303	+	3'-UTR,5'-UTR,intron-Proximal	3.34340	17.16463	K562	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 52 entries

eCLIP assay for TMOD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TMOD3 is not available on ENCORE database.
77 RBPs can affect the levels of TMOD3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TMOD3 is not available on ENCORE database.

77 RBPs can affect the gene expression of TMOD3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TMOD3	ENSG00000138594.8	1204.48220	3093.76920	-1.36100	76.08650	73.31230	K562	UPF1
TMOD3	ENSG00000138594.8	394.67910	1013.66060	-1.36080	41.46180	39.50150	HepG2	ZC3H8
TMOD3	ENSG00000138594.8	1301.61350	2626.04150	-1.01260	41.29210	38.86430	K562	MTPAP
TMOD3	ENSG00000138594.8	2720.09980	1526.70890	0.83310	37.40380	35.99120	HepG2	ZNF622
TMOD3	ENSG00000138594.8	2819.62130	1535.26180	0.87690	35.34840	34.08740	HepG2	SRFBP1
TMOD3	ENSG00000138594.8	196.87930	595.78220	-1.59750	19.48750	17.52060	HepG2	UCHL5
TMOD3	ENSG00000138594.8	4836.18870	3293.29780	0.55420	16.80510	15.53020	K562	AGGF1
TMOD3	ENSG00000138594.8	708.05500	1203.76550	-0.76560	16.04650	14.78280	HepG2	PCBP1
TMOD3	ENSG00000138594.8	2069.23540	1331.09050	0.63640	15.24790	14.32920	HepG2	SRSF1
TMOD3	ENSG00000138594.8	2796.94440	1373.68240	1.02570	14.54550	13.06570	HepG2	U2AF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 90 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TMOD3 is not available on ENCORE database.

1 RBPs can affect the splicing of TMOD3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	TMOD3	ENSG00000138594.8	chr15	+	52181252	52181342			52161413	52161570	52186011	52186142	-0.06600	0.00468	0.04401	excluded	K562	AQR

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TMOD3

General Information

Functions

Localization

Domains (AlphaFold: TMOD3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TMOD3 is not avaliable on ENCORE database.

20 proteins are bound to TMOD3 RNA:

eCLIP assay for TMOD3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TMOD3 is not available on ENCORE database.

77 RBPs can affect the gene expression of TMOD3 :

The Knockdown/knockout RNA-Seq assay for TMOD3 is not available on ENCORE database.

1 RBPs can affect the splicing of TMOD3 :

The Knockdown/knockout RNA-Seq assay for TMOD3 is not avaliable on ENCORE database.