TGS1

General Information

Gene Name : TGS1
Gene ID : ENSG00000137574.10
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TGS1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TGS1	ENSG00000137574.10	24.65	22.11	23.38	ENCSR000AEF
HepG2	TGS1	ENSG00000137574.10	9.81	16.00	12.91	ENCSR985KAT
K562	TGS1	ENSG00000137574.10	17.44	17.86	17.65	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TGS1 is not avaliable on ENCORE database.

Proteins bound to RNA

TGS1 RNA is bound by 11 proteins.

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eCLIP assay for TGS1 is not avaliable on ENCORE database.

11 proteins are bound to TGS1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	56715017	56715098	+	3'-UTR,CDS	4.69379	11.82742	K562	UCHL5
chr8	56737937	56737996	+	3'-UTR	4.65252	9.17735	K562	PUM2
chr8	56705442	56705545	+	intron-Distal,intron-Proximal	4.05718	9.06934	K562	KHSRP
chr8	56702861	56702919	+	intron-Proximal	4.15307	8.27931	K562	AQR
chr8	56730403	56730528	+	intron-Distal	4.14483	8.24016	K562	HNRNPL
chr8	56686280	56686404	+	intron-Distal,intron-Proximal	4.73306	6.93191	K562	KHSRP
chr8	56699207	56699297	+	5'-UTR,CDS	3.28495	6.72164	K562	UCHL5
chr8	56730398	56730517	+	intron-Distal	3.00299	6.35060	HepG2	HNRNPL
chr8	56711737	56711777	+	5'-UTR,CDS	3.84707	5.85226	K562	UCHL5
chr8	56702858	56702861	+	intron-Proximal	5.19963	5.65342	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 25 entries

eCLIP assay for TGS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TGS1 is not available on ENCORE database.
67 RBPs can affect the levels of TGS1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TGS1 is not available on ENCORE database.

67 RBPs can affect the gene expression of TGS1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TGS1	ENSG00000137574.6	836.83210	390.27670	1.10030	20.04160	19.01500	HepG2	SRSF1
TGS1	ENSG00000137574.6	193.63860	552.21590	-1.51190	19.60780	17.98280	HepG2	CPSF6
TGS1	ENSG00000137574.6	673.13650	1083.61770	-0.68690	12.42580	10.85410	K562	MTPAP
TGS1	ENSG00000137574.6	318.63750	601.51650	-0.91670	9.69450	8.66130	HepG2	BOP1
TGS1	ENSG00000137574.6	309.70600	597.36250	-0.94770	9.13590	8.06540	HepG2	HNRNPLL
TGS1	ENSG00000137574.6	830.59080	1407.01090	-0.76040	8.86240	7.93860	K562	PUS1
TGS1	ENSG00000137574.6	326.67780	586.11980	-0.84330	8.24170	7.16210	HepG2	RPLP0
TGS1	ENSG00000137574.6	618.32610	385.49000	0.68160	7.93360	7.00300	HepG2	UTP3
TGS1	ENSG00000137574.6	409.10180	643.86610	-0.65430	7.75360	6.69710	HepG2	AUH
TGS1	ENSG00000137574.6	1093.64170	748.52510	0.54690	7.33530	6.41350	K562	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 78 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TGS1 is not available on ENCORE database.

9 RBPs can affect the splicing of TGS1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TGS1	ENSG00000137574.6	chr8	+	56695306	56695371			56685700	56686278	56698277	56698450	-0.26900	0.00000	0.00015	excluded	K562	AKAP8L
SE	TGS1	ENSG00000137574.6	chr8	+	56705256	56705343			56702687	56702858	56708536	56708711	-0.13900	0.00000	0.00002	excluded	K562	AQR
SE	TGS1	ENSG00000137574.6	chr8	+	56695306	56695371			56685700	56686278	56698277	56698450	-0.26700	0.00000	0.00000	excluded	K562	AQR
SE	TGS1	ENSG00000137574.6	chr8	+	56695306	56695371			56685700	56686278	56698277	56698450	-0.34000	0.00000	0.00001	excluded	K562	PUS1
SE	TGS1	ENSG00000137574.6	chr8	+	56695306	56695371			56685700	56686278	56698277	56698450	-0.30800	0.00000	0.00002	excluded	K562	AGGF1
A3SS	TGS1	ENSG00000137574.6	chr8	+	56714983	56715165			56715015	56715165	56711472	56711779	0.08300	0.00000	0.00001	longer	K562	AQR
A3SS	TGS1	ENSG00000137574.6	chr8	+	56702684	56702858			56702740	56702858	56698796	56699619	0.05900	0.00000	0.00002	longer	K562	AQR
MXE	TGS1	ENSG00000137574.6	chr8	+	56708536	56708711	56711472	56711779	56702740	56702858	56715015	56715165	0.13200	0.00001	0.00014	1included	K562	AQR
SE	TGS1	ENSG00000137574.6	chr8	+	56695306	56695371			56685700	56686278	56698277	56698450	-0.17700	0.00005	0.01685	excluded	K562	NPM1
MXE	TGS1	ENSG00000137574.6	chr8	+	56705256	56705343	56710730	56710973	56702655	56702858	56711472	56711557	-0.12300	0.00007	0.00435	2included	K562	AGGF1

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TGS1

General Information

Functions

Localization

Domains (AlphaFold: TGS1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TGS1 is not avaliable on ENCORE database.

11 proteins are bound to TGS1 RNA:

eCLIP assay for TGS1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TGS1 is not available on ENCORE database.

67 RBPs can affect the gene expression of TGS1 :

The Knockdown/knockout RNA-Seq assay for TGS1 is not available on ENCORE database.

9 RBPs can affect the splicing of TGS1 :

The Knockdown/knockout RNA-Seq assay for TGS1 is not avaliable on ENCORE database.