SPECC1L

General Information

Gene Name : SPECC1L
Gene ID : ENSG00000100014.19
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SPECC1L)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SPECC1L	ENSG00000100014.19	13.57	14.34	13.96	ENCSR000AEF
HepG2	SPECC1L	ENSG00000100014.19	19.03	22.45	20.74	ENCSR985KAT
K562	SPECC1L	ENSG00000100014.19	8.47	9.75	9.11	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SPECC1L is not avaliable on ENCORE database.

Proteins bound to RNA

SPECC1L RNA is bound by 24 proteins.

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eCLIP assay for SPECC1L is not avaliable on ENCORE database.

24 proteins are bound to SPECC1L RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	24798093	24798181	+	intron-Distal	6.35788	78.94663	HepG2	PCBP2
chr22	24798069	24798185	+	intron-Distal	5.96686	36.59016	HepG2	HNRNPK
chr22	24812386	24812462	+	3'-UTR,intron-Distal	5.77728	33.83289	K562	UPF1
chr22	24811177	24811320	+	3'-UTR,intron-Distal	5.49724	23.50738	HepG2	UPF1
chr22	24811528	24811597	+	3'-UTR,intron-Distal	4.72269	17.08773	K562	UPF1
chr22	24811458	24811528	+	3'-UTR,intron-Distal	6.14169	16.29100	K562	UPF1
chr22	24718644	24718772	+	CDS,intron-Distal	4.16507	15.85384	HepG2	BCLAF1
chr22	24798089	24798250	+	intron-Distal	4.32353	15.61714	HepG2	DDX59
chr22	24810671	24810743	+	3'-UTR,intron-Proximal	5.94336	15.41547	HepG2	UPF1
chr22	24810965	24811088	+	3'-UTR,intron-Distal	4.43646	14.61601	HepG2	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 89 entries

eCLIP assay for SPECC1L is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SPECC1L is not available on ENCORE database.
65 RBPs can affect the levels of SPECC1L.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SPECC1L is not available on ENCORE database.

65 RBPs can affect the gene expression of SPECC1L :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SPECC1L	ENSG00000100014.15	640.01070	1335.83940	-1.06160	28.13400	26.41980	K562	AGGF1
SPECC1L	ENSG00000100014.15	772.11880	1389.99500	-0.84820	13.06030	11.48500	K562	AKAP8L
SPECC1L	ENSG00000100014.15	708.74990	1279.03430	-0.85170	11.30530	10.23700	K562	AQR
SPECC1L	ENSG00000100014.15	1213.90570	1990.02740	-0.71310	10.10230	8.84410	HepG2	TARDBP
SPECC1L	ENSG00000100014.15	1177.38150	1683.93480	-0.51630	9.04790	7.54040	HepG2	HNRNPA2B1
SPECC1L	ENSG00000100014.15	919.63520	1343.14110	-0.54650	7.65670	6.70030	K562	RBM15
SPECC1L	ENSG00000100014.15	794.31150	1271.46740	-0.67870	7.71540	6.64040	HepG2	DDX21
SPECC1L	ENSG00000100014.15	1262.44580	1669.05200	-0.40280	7.23550	6.19270	HepG2	HNRNPL
SPECC1L	ENSG00000100014.15	1051.79790	680.57580	0.62790	6.96680	5.67160	K562	EIF4A3
SPECC1L	ENSG00000100014.15	2463.35590	1947.53640	0.33890	6.39800	5.52140	HepG2	SUCLG1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 74 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SPECC1L is not available on ENCORE database.

8 RBPs can affect the splicing of SPECC1L :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SPECC1L	ENSG00000100014.15	chr22	+	24672667	24672771			24666807	24666951	24698162	24698352	-0.14400	0.00001	0.00023	excluded	HepG2	U2AF2
MXE	SPECC1L	ENSG00000100014.15	chr22	+	24698162	24698352	24709280	24709434	24666785	24666951	24717255	24718886	-0.12000	0.00001	0.00157	2included	K562	FMR1
SE	SPECC1L	ENSG00000100014.15	chr22	+	24672667	24672771			24666807	24666951	24698162	24698352	-0.18700	0.00008	0.00231	excluded	HepG2	U2AF1
SE	SPECC1L	ENSG00000100014.15	chr22	+	24672667	24672771			24666807	24666951	24698162	24698352	0.51500	0.00008	0.01397	included	K562	FMR1
SE	SPECC1L	ENSG00000100014.15	chr22	+	24672667	24672771			24666807	24666951	24698162	24698352	-0.40000	0.00008	0.00742	excluded	K562	EFTUD2
SE	SPECC1L	ENSG00000100014.15	chr22	+	24672667	24672771			24666807	24666951	24698162	24698352	-0.23200	0.00010	0.00481	excluded	HepG2	SF3A3
MXE	SPECC1L	ENSG00000100014.15	chr22	+	24698162	24698352	24709280	24709434	24666785	24666951	24717255	24718886	0.28200	0.00069	0.02509	1included	K562	EFTUD2
SE	SPECC1L	ENSG00000100014.15	chr22	+	24672667	24672771			24666807	24666951	24698162	24698352	-0.35700	0.00099	0.03755	excluded	K562	TARDBP
SE	SPECC1L	ENSG00000100014.15	chr22	+	24672667	24672771			24666807	24666951	24698162	24698352	-0.36300	0.00132	0.04602	excluded	K562	PRPF8
MXE	SPECC1L	ENSG00000100014.15	chr22	+	24672667	24672771	24709280	24709434	24666807	24666951	24717255	24718886	-0.06300	0.00165	0.03160	2included	HepG2	U2AF1

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SPECC1L

General Information

Functions

Localization

Domains (AlphaFold: SPECC1L)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SPECC1L is not avaliable on ENCORE database.

24 proteins are bound to SPECC1L RNA:

eCLIP assay for SPECC1L is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SPECC1L is not available on ENCORE database.

65 RBPs can affect the gene expression of SPECC1L :

The Knockdown/knockout RNA-Seq assay for SPECC1L is not available on ENCORE database.

8 RBPs can affect the splicing of SPECC1L :

The Knockdown/knockout RNA-Seq assay for SPECC1L is not avaliable on ENCORE database.