SNX2

General Information

Gene Name : SNX2
Gene ID : ENSG00000205302.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNX2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNX2	ENSG00000205302.6	52.93	46.71	49.82	ENCSR000AEF
HepG2	SNX2	ENSG00000205302.6	27.91	42.93	35.42	ENCSR985KAT
K562	SNX2	ENSG00000205302.6	36.31	39.10	37.70	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNX2 is not avaliable on ENCORE database.

Proteins bound to RNA

SNX2 RNA is bound by 14 proteins.

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eCLIP assay for SNX2 is not avaliable on ENCORE database.

14 proteins are bound to SNX2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	122165512	122165589	+	3'-UTR	7.08768	36.76087	K562	HNRNPL
chr5	122165509	122165605	+	3'-UTR	4.46629	36.65851	K562	AGGF1
chr5	122165446	122165512	+	3'-UTR	5.58874	25.20658	K562	HNRNPL
chr5	122165345	122165422	+	3'-UTR	5.95348	10.21115	HepG2	SUB1
chr5	122152543	122152615	+	3'-UTR,CDS,intron-Proximal	4.47668	10.20178	K562	SF3B4
chr5	122165444	122165505	+	3'-UTR	5.51025	9.00031	HepG2	HNRNPL
chr5	122144100	122144192	+	intron-Distal,intron-Proximal	5.31568	8.94695	K562	KHSRP
chr5	122134907	122135014	+	intron-Distal	5.82233	8.73280	K562	QKI
chr5	122165292	122165358	+	3'-UTR,CDS,intron-Proximal	4.36743	8.15024	HepG2	BCLAF1
chr5	122165735	122165789	+	3'-UTR	4.45901	7.87748	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 43 entries

eCLIP assay for SNX2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNX2 is not available on ENCORE database.
74 RBPs can affect the levels of SNX2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SNX2 is not available on ENCORE database.

74 RBPs can affect the gene expression of SNX2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNX2	ENSG00000205302.2	892.62930	1544.96450	-0.79140	17.60880	16.02200	K562	EIF2S2
SNX2	ENSG00000205302.2	3540.08870	2089.73610	0.76040	12.59400	11.48120	K562	PUS1
SNX2	ENSG00000205302.2	507.75760	899.77360	-0.82540	10.64430	8.55550	HepG2	EIF2S2
SNX2	ENSG00000205302.2	2242.06220	1630.87630	0.45910	9.17850	8.42920	HepG2	SRSF1
SNX2	ENSG00000205302.2	455.32570	796.54500	-0.80690	9.27180	8.19000	HepG2	HNRNPA1
SNX2	ENSG00000205302.2	2692.58800	2025.11170	0.41090	8.08060	7.18150	K562	AGGF1
SNX2	ENSG00000205302.2	2786.13760	2036.17970	0.45230	7.58170	6.63010	K562	RBM15
SNX2	ENSG00000205302.2	1078.50980	1500.75500	-0.47660	7.32310	6.51640	HepG2	PTBP1
SNX2	ENSG00000205302.2	1989.31090	1532.20610	0.37660	6.31100	5.59390	HepG2	SSB
SNX2	ENSG00000205302.2	1258.95510	1660.20160	-0.39910	6.53460	5.16680	K562	SRPK2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 87 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNX2 is not available on ENCORE database.

12 RBPs can affect the splicing of SNX2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SNX2	ENSG00000205302.2	chr5	+	122163073	122163154			122161744	122161888	122163269	122163341	-0.10200	0.00000	0.00000	excluded	K562	AQR
A3SS	SNX2	ENSG00000205302.2	chr5	+	122152950	122153068			122152974	122153068	122152609	122152723	0.06900	0.00000	0.00000	longer	K562	AQR
MXE	SNX2	ENSG00000205302.2	chr5	+	122130960	122131078	122135386	122135550	122110690	122110906	122137563	122137630	0.11500	0.00000	0.00052	1included	K562	LIN28B
MXE	SNX2	ENSG00000205302.2	chr5	+	122130960	122131078	122135386	122135550	122110690	122110906	122137563	122137630	0.11400	0.00000	0.00027	1included	K562	LARP7
MXE	SNX2	ENSG00000205302.2	chr5	+	122130960	122131078	122135386	122135550	122110690	122110906	122137563	122137630	0.16900	0.00000	0.00016	1included	HepG2	XRN2
MXE	SNX2	ENSG00000205302.2	chr5	+	122130960	122131078	122135386	122135550	122110690	122110906	122137563	122137630	0.19100	0.00000	0.00000	1included	HepG2	DDX55
MXE	SNX2	ENSG00000205302.2	chr5	+	122130960	122131078	122135386	122135550	122110690	122110906	122137563	122137630	0.10900	0.00000	0.00103	1included	K562	PHF6
SE	SNX2	ENSG00000205302.2	chr5	+	122151566	122151666			122143839	122144050	122152609	122152723	-0.06900	0.00005	0.00095	excluded	K562	AQR
MXE	SNX2	ENSG00000205302.2	chr5	+	122130960	122131078	122135386	122135550	122110690	122110906	122137563	122137630	0.10100	0.00005	0.00194	1included	K562	HNRNPC
MXE	SNX2	ENSG00000205302.2	chr5	+	122130960	122131078	122135386	122135550	122110690	122110906	122137563	122137630	-0.09600	0.00010	0.02726	2included	K562	SMNDC1

Showing 1 to 10 of 14 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNX2

General Information

Functions

Localization

Domains (AlphaFold: SNX2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNX2 is not avaliable on ENCORE database.

14 proteins are bound to SNX2 RNA:

eCLIP assay for SNX2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNX2 is not available on ENCORE database.

74 RBPs can affect the gene expression of SNX2 :

The Knockdown/knockout RNA-Seq assay for SNX2 is not available on ENCORE database.

12 RBPs can affect the splicing of SNX2 :

The Knockdown/knockout RNA-Seq assay for SNX2 is not avaliable on ENCORE database.