SMARCD1

General Information

Gene Name : SMARCD1
Gene ID : ENSG00000066117.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SMARCD1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SMARCD1	ENSG00000066117.14	60.75	62.91	61.83	ENCSR000AEF
HepG2	SMARCD1	ENSG00000066117.14	58.24	61.72	59.98	ENCSR985KAT
K562	SMARCD1	ENSG00000066117.14	61.82	61.67	61.75	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SMARCD1 is not avaliable on ENCORE database.

Proteins bound to RNA

SMARCD1 RNA is bound by 28 proteins.

CanvasJS.com

eCLIP assay for SMARCD1 is not avaliable on ENCORE database.

28 proteins are bound to SMARCD1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	50493595	50493677	+	3'-UTR,intron-Distal	5.89559	27.96859	K562	UPF1
chr12	50493000	50493053	+	3'-UTR,intron-Distal,intron-Proximal	5.50682	27.76742	HepG2	PCBP2
chr12	50494161	50494295	+	3'-UTR	3.60828	26.23831	K562	PABPC4
chr12	50493520	50493595	+	3'-UTR,intron-Distal,intron-Proximal	5.85109	26.18636	K562	UPF1
chr12	50493923	50494022	+	3'-UTR	3.53075	19.98197	K562	UPF1
chr12	50494159	50494281	+	3'-UTR	3.09947	19.19654	K562	UPF1
chr12	50494179	50494237	+	3'-UTR	4.99174	17.98347	HepG2	PCBP2
chr12	50492980	50493000	+	3'-UTR,intron-Proximal	6.00090	17.74444	HepG2	PCBP2
chr12	50493437	50493520	+	3'-UTR,intron-Distal,intron-Proximal	3.95032	15.97298	K562	UPF1
chr12	50493947	50494044	+	3'-UTR	3.95609	15.85642	K562	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 89 entries

eCLIP assay for SMARCD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SMARCD1 is not available on ENCORE database.
70 RBPs can affect the levels of SMARCD1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SMARCD1 is not available on ENCORE database.

70 RBPs can affect the gene expression of SMARCD1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SMARCD1	ENSG00000066117.10	720.06440	1850.97910	-1.36210	54.53820	52.09510	HepG2	PRPF4
SMARCD1	ENSG00000066117.10	4720.93200	2648.79370	0.83360	39.74320	38.42060	HepG2	SRFBP1
SMARCD1	ENSG00000066117.10	2749.65690	1529.41810	0.84620	28.38110	26.76970	HepG2	UTP3
SMARCD1	ENSG00000066117.10	2934.79740	1733.18930	0.75970	25.70370	24.58100	HepG2	SRSF1
SMARCD1	ENSG00000066117.10	1441.03800	2363.45430	-0.71380	24.68360	22.88700	HepG2	DAZAP1
SMARCD1	ENSG00000066117.10	876.40670	1548.33230	-0.82100	18.40100	16.75260	HepG2	DNAJC21
SMARCD1	ENSG00000066117.10	2501.07000	1608.14640	0.63700	17.77640	16.45820	HepG2	PUS1
SMARCD1	ENSG00000066117.10	3443.02040	2345.17560	0.55390	12.63150	11.68650	HepG2	RBM22
SMARCD1	ENSG00000066117.10	2267.30460	1578.87300	0.52200	12.62800	11.53070	HepG2	ACO1
SMARCD1	ENSG00000066117.10	553.78310	1342.74130	-1.27780	14.59130	11.46230	K562	SERBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 80 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SMARCD1 is not available on ENCORE database.

18 RBPs can affect the splicing of SMARCD1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SMARCD1	ENSG00000066117.10	chr12	+	50481145	50481268	50480538	50480661	50482303	50482420	-0.24300	0.00000	0.00000	excluded	K562	SRSF1
SE	SMARCD1	ENSG00000066117.10	chr12	+	50481145	50481268	50480538	50480661	50482303	50482420	-0.23400	0.00000	0.00011	excluded	HepG2	U2AF1
SE	SMARCD1	ENSG00000066117.10	chr12	+	50490978	50491120	50490597	50490755	50492496	50492598	0.05700	0.00000	0.00000	included	K562	AQR
SE	SMARCD1	ENSG00000066117.10	chr12	+	50481145	50481268	50480538	50480661	50482303	50482420	-0.30300	0.00000	0.00000	excluded	HepG2	SRSF1
SE	SMARCD1	ENSG00000066117.10	chr12	+	50482303	50482420	50480538	50480661	50483666	50483768	-0.24300	0.00000	0.00012	excluded	HepG2	HNRNPU
A3SS	SMARCD1	ENSG00000066117.10	chr12	+	50480387	50480446	50480403	50480446	50479943	50480131	0.09200	0.00000	0.00001	longer	K562	AQR
A5SS	SMARCD1	ENSG00000066117.10	chr12	+	50482303	50482507	50482303	50482420	50483666	50483768	0.06900	0.00000	0.00059	longer	HepG2	RBM22
SE	SMARCD1	ENSG00000066117.10	chr12	+	50490632	50490755	50488171	50488355	50492496	50492598	-0.10600	0.00001	0.00024	excluded	K562	AQR
SE	SMARCD1	ENSG00000066117.10	chr12	+	50481145	50481268	50480538	50480661	50482303	50482420	-0.19600	0.00001	0.00233	excluded	HepG2	PCBP2
SE	SMARCD1	ENSG00000066117.10	chr12	+	50481145	50481268	50480538	50480661	50482303	50482420	-0.16500	0.00003	0.00748	excluded	HepG2	SSB

Showing 1 to 10 of 31 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SMARCD1

General Information

Functions

Localization

Domains (AlphaFold: SMARCD1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SMARCD1 is not avaliable on ENCORE database.

28 proteins are bound to SMARCD1 RNA:

eCLIP assay for SMARCD1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SMARCD1 is not available on ENCORE database.

70 RBPs can affect the gene expression of SMARCD1 :

The Knockdown/knockout RNA-Seq assay for SMARCD1 is not available on ENCORE database.

18 RBPs can affect the splicing of SMARCD1 :

The Knockdown/knockout RNA-Seq assay for SMARCD1 is not avaliable on ENCORE database.