SLMO1

General Information

Gene Name       : SLMO1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SLMO1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SLMO1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SLMO1 RNA is bound by 12 proteins.  







eCLIP assay for SLMO1 is not avaliable on ENCORE database.





12 proteins are bound to SLMO1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr181242934812429375+3'-UTR,CDS,intron-Proximal4.010183.31330K562UPF1
chr181242154212421628+3'-UTR,5'-UTR,CDS3.228285.57447HepG2GRWD1
chr181242157312421626+3'-UTR,5'-UTR,CDS3.478938.19289HepG2PPIG
chr181243126312431336+3'-UTR4.045375.81489K562UPF1
chr181243119512431340+3'-UTR4.428494.68979HepG2UPF1
chr181242728812427323+3'-UTR,CDS,intron-Proximal4.010183.31330K562UPF1
chr181243114612431263+3'-UTR,intron-Proximal5.473188.80636K562UPF1
chr181242725912427324+3'-UTR,CDS,intron-Proximal3.018357.17439HepG2BCLAF1
chr181243129712431363+3'-UTR5.152448.25598HepG2PPIG
chr181242703912427076+3'-UTR,CDS,intron-Proximal3.760343.38114HepG2GRWD1
chr181243114712431266+3'-UTR,intron-Proximal4.1178614.50064HepG2PPIG
chr181243189112432008+3'-UTR4.565149.43510K562UPF1
chr181242729812427322+3'-UTR,CDS3.662324.68902HepG2PPIG
chr181241997812420095+5'-UTR,CDS,intron-Distal,intron-Proximal4.430204.87288HepG2NCBP2
chr181240798812408088+5'-UTR,CDS,intron-Proximal3.288113.18246K562PRPF8
chr181242108412421154+intron-Distal4.344164.57620HepG2PRPF4
chr181242080112420885+intron-Distal4.299146.93029HepG2GTF2F1
chr181242080612420897+intron-Distal3.677247.95694HepG2NKRF
chr181242091912420981+intron-Distal4.425934.70962HepG2GTF2F1
chr181243092812431029+intron-Distal3.426444.79863K562TARDBP
chr181242075612420890+intron-Distal5.0154524.48414HepG2FAM120A
chr181242079012420907+intron-Distal6.5416025.74348HepG2PRPF4
chr181242094312420988+intron-Distal3.978893.70701HepG2PRPF4
chr181243048512430583+intron-Distal4.006673.87294K562TARDBP
chr181242080112420907+intron-Distal3.183988.95566HepG2PRPF8
chr181243073912430928+intron-Distal4.675195.29390K562TARDBP
chr181242080812420883+intron-Distal4.102006.36044HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SLMO1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SLMO1 is not available on ENCORE database.

  • 58 RBPs can affect the levels of SLMO1.  








The Knockdown/knockout RNA-Seq assay for SLMO1 is not available on ENCORE database.





58 RBPs can affect the gene expression of SLMO1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SLMO1ENSG00000141391.985.97230222.07870-1.3691011.9714010.89700HepG2ACO1
SLMO1ENSG00000141391.977.83420147.00960-0.917403.109502.54970HepG2AKAP1
SLMO1ENSG00000141391.9151.68190223.14060-0.556902.876402.09500HepG2AKAP8L
SLMO1ENSG00000141391.962.31270121.63230-0.964903.271202.41720HepG2ASCC1
SLMO1ENSG00000141391.9136.77540205.21950-0.585402.785802.09850HepG2AUH
SLMO1ENSG00000141391.9119.39500222.05260-0.895206.257105.32950HepG2CKAP4
SLMO1ENSG00000141391.9125.27050203.25540-0.698203.376702.68100HepG2CELF1
SLMO1ENSG00000141391.966.03670140.81170-1.092404.414703.63840HepG2DDX3X
SLMO1ENSG00000141391.997.44070188.91460-0.955104.339103.20990HepG2EEF2
SLMO1ENSG00000141391.986.13900157.48380-0.870503.656602.37210HepG2EFTUD2
SLMO1ENSG00000141391.955.04250153.35370-1.478207.723206.28170HepG2EIF3D
SLMO1ENSG00000141391.9175.61020235.64890-0.424301.835001.32440HepG2ETF1
SLMO1ENSG00000141391.9128.25480217.03030-0.758904.119703.10070HepG2EWSR1
SLMO1ENSG00000141391.987.65510215.39980-1.297105.410304.36460HepG2FIP1L1
SLMO1ENSG00000141391.977.09480136.54080-0.824602.743601.84910HepG2GEMIN5
SLMO1ENSG00000141391.9161.82920106.764700.599902.486601.91100HepG2HNRNPU
SLMO1ENSG00000141391.973.20740160.49640-1.132503.563902.37460HepG2METAP2
SLMO1ENSG00000141391.9148.7108090.533000.715902.238201.56280HepG2NSUN2
SLMO1ENSG00000141391.9239.77020135.528300.823005.571604.75720HepG2PCBP1
SLMO1ENSG00000141391.969.60030147.71220-1.085604.524203.21950HepG2PCBP2
SLMO1ENSG00000141391.971.97900126.82020-0.817103.022101.73520HepG2PKM
SLMO1ENSG00000141391.924.2011087.12860-1.848106.308605.14150HepG2PRPF8
SLMO1ENSG00000141391.998.66060206.84020-1.068005.990405.15740HepG2PUF60
SLMO1ENSG00000141391.9112.81480219.58650-0.960806.560605.72880HepG2PUM1
SLMO1ENSG00000141391.9106.24110219.41580-1.046306.239205.24610HepG2PUM2
SLMO1ENSG00000141391.964.56950142.52700-1.142303.628202.82320HepG2RAVER1
SLMO1ENSG00000141391.9168.38600245.70120-0.545102.592401.76070HepG2RBM15
SLMO1ENSG00000141391.963.11110196.95270-1.6419011.9465011.02560HepG2RBM22
SLMO1ENSG00000141391.977.77310140.03920-0.848502.868401.90860HepG2RPS10
SLMO1ENSG00000141391.949.02860149.22330-1.605809.304108.25520HepG2RPS19
SLMO1ENSG00000141391.9135.5733074.184600.869802.958102.13250HepG2RPS3A
SLMO1ENSG00000141391.928.7033086.18670-1.586204.835003.82820HepG2RRP9
SLMO1ENSG00000141391.940.06650149.76340-1.9022011.312209.47130HepG2SERBP1
SLMO1ENSG00000141391.9100.89730335.35800-1.7328015.6968014.01430HepG2SF3A3
SLMO1ENSG00000141391.9273.44060198.361400.463002.773602.07090HepG2SLBP
SLMO1ENSG00000141391.970.95730145.42430-1.035204.380203.15770HepG2SMNDC1
SLMO1ENSG00000141391.947.67210149.86290-1.652409.287608.53510HepG2SRSF1
SLMO1ENSG00000141391.946.20600108.74510-1.234803.034001.97750HepG2SRSF3
SLMO1ENSG00000141391.9142.58520204.24440-0.518502.071701.52050HepG2SRSF5
SLMO1ENSG00000141391.9152.94500232.26510-0.602803.018702.37430HepG2SUCLG1
SLMO1ENSG00000141391.962.21380121.85560-0.969903.527301.76020HepG2TROVE2
SLMO1ENSG00000141391.999.03950184.19190-0.895102.505501.90600HepG2U2AF1
SLMO1ENSG00000141391.961.74630230.41210-1.899806.441104.85680HepG2U2AF2
SLMO1ENSG00000141391.9177.31440297.41160-0.746205.626604.68640HepG2UPF1
SLMO1ENSG00000141391.9197.36130305.69570-0.631304.286803.01600HepG2UTP18
SLMO1ENSG00000141391.9107.15330287.13880-1.4221014.3685013.16410HepG2UTP3
SLMO1ENSG00000141391.9179.23980110.696600.695202.268501.60670HepG2XRN2
SLMO1ENSG00000141391.9122.64490327.09540-1.4152018.1474017.05010HepG2ZNF622
SLMO1ENSG00000141391.955.62790108.73820-0.967003.008201.51760K562BUD13
SLMO1ENSG00000141391.9394.87910124.951301.6599024.8318023.07160K562DDX47
SLMO1ENSG00000141391.9106.9585045.025801.248102.951001.90990K562EIF3A
SLMO1ENSG00000141391.9107.1150051.068701.068603.613202.71180K562EIF3G
SLMO1ENSG00000141391.9144.7581094.852800.609802.121201.39810K562EIF4A3
SLMO1ENSG00000141391.959.68940112.22050-0.910803.068102.17290K562FIP1L1
SLMO1ENSG00000141391.9115.7817061.873300.903902.810901.37710K562GEMIN5
SLMO1ENSG00000141391.9281.45660147.483700.932305.671204.58480K562GRSF1
SLMO1ENSG00000141391.9182.0474097.118700.906404.878803.46750K562HNRNPA1
SLMO1ENSG00000141391.9118.3276073.066200.695402.047701.52320K562HNRNPC
SLMO1ENSG00000141391.9186.5230077.279101.271105.683604.46730K562MAGOH
SLMO1ENSG00000141391.983.07240150.59680-0.858202.642201.44180K562PABPC1
SLMO1ENSG00000141391.9175.7585061.166701.522707.847106.45990K562RPS19
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SLMO1 is not available on ENCORE database.





3 RBPs can affect the splicing of SLMO1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESLMO1ENSG00000141391.9chr18+1242032312420492124078941240800612421538124216280.480000.000070.02556includedK562WDR3
SESLMO1ENSG00000141391.9chr18+124293481242943512427219124273221243114812431462-0.252000.005750.08443excludedHepG2U2AF1
SESLMO1ENSG00000141391.9chr18+124270391242711012421538124216281242721912427322-0.082000.005090.05389excludedHepG2U2AF2
SESLMO1ENSG00000141391.9chr18+124293481242943512427219124273221243114812431462-0.095000.001490.01978excludedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SLMO1 is not avaliable on ENCORE database.