SCP2

General Information

Gene Name       : SCP2
Gene ID             : ENSG00000116171.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCP2ENSG00000116171.17103.9287.1395.53ENCSR000AEF
HepG2SCP2ENSG00000116171.1745.7394.8470.28ENCSR985KAT
K562SCP2ENSG00000116171.1772.7771.1771.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCP2 RNA is bound by 13 proteins.  







eCLIP assay for SCP2 is not avaliable on ENCORE database.





13 proteins are bound to SCP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr15350461053504719+3'-UTR,CDS,intron-Distal,intron-Proximal5.331446.69987K562RPS3
chr15351722453517261+3'-UTR4.2156512.51696K562PABPC4
chr15349370753493751+3'-UTR,CDS,intron-Distal,intron-Proximal3.415547.02567HepG2BCLAF1
chr15350468353504720+3'-UTR,CDS,intron-Distal,intron-Proximal3.115536.09950HepG2BCLAF1
chr15350462053504697+3'-UTR,CDS,intron-Distal3.059404.14020K562BUD13
chr15351658953516661+3'-UTR4.8284914.81434HepG2SUB1
chr15351654753516583+3'-UTR6.7227619.82003HepG2SUB1
chr15351363853513767+3'-UTR,intron-Distal,intron-Proximal3.678914.65388K562PRPF8
chr15350461053504683+3'-UTR,CDS,intron-Distal3.6472110.64917HepG2BCLAF1
chr15351681653516880+3'-UTR4.186933.98311K562IGF2BP1
chr15351353253513590+3'-UTR,CDS3.178075.79905HepG2BCLAF1
chr15350458353504620+3'-UTR,CDS,intron-Distal,intron-Proximal4.127683.96990K562BUD13
chr15351648153516547+3'-UTR5.5597023.04342HepG2SUB1
chr15350458853504697+3'-UTR,CDS,intron-Distal,intron-Proximal3.976816.06308HepG2PPIG
chr15349369653493744+3'-UTR,CDS,intron-Distal,intron-Proximal3.951395.14848K562ZNF622
chr15350461453504690+3'-UTR,CDS,intron-Distal3.398117.31809HepG2GRWD1
chr15350458553504616+3'-UTR,CDS,intron-Distal,intron-Proximal3.599063.05298K562GRWD1
chr15349369853493747+3'-UTR,CDS,intron-Distal,intron-Proximal3.725823.43526K562GRWD1
chr15341369853413751+5'-UTR,CDS,intron-Distal4.530348.41475HepG2BCLAF1
chr15341642553416493+5'-UTR,CDS,intron-Distal,intron-Proximal3.495385.15500HepG2BCLAF1
chr15344393153443980+CDS3.696425.15500HepG2BCLAF1
chr15344242553442441+CDS,intron-Distal3.837625.06180HepG2BCLAF1
chr15344398453444040+CDS,intron-Proximal5.607987.95223HepG2BCLAF1
chr15342041553420474+CDS3.033784.23325HepG2BCLAF1
chr15342725153427299+CDS3.630115.97823HepG2BCLAF1
chr15344606753446121+CDS,intron-Proximal3.813177.28307HepG2BCLAF1
chr15345369853453741+CDS,intron-Proximal3.484024.85828HepG2BCLAF1
chr15344616253446218+CDS,intron-Proximal3.238725.40132HepG2BCLAF1
chr15345374153453816+CDS,intron-Proximal4.283825.65086HepG2BCLAF1
chr15344388453443931+CDS,intron-Proximal4.491348.41475HepG2BCLAF1
chr15344045353440511+CDS,intron-Distal,intron-Proximal3.230925.07457HepG2BCLAF1
chr15350363253503728+intron-Distal4.159104.49526HepG2AGGF1
chr15350325853503314+intron-Distal4.082433.42885K562AGGF1
chr15346975053469869+intron-Distal4.794806.23638HepG2QKI
chr15350427553504310+intron-Distal3.587133.64859K562AGGF1
chr15344962653449714+intron-Distal4.180033.84389HepG2SUGP2
chr15344984453449949+intron-Distal3.092544.61989HepG2SUGP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCP2 is not available on ENCORE database.

  • 107 RBPs can affect the levels of SCP2.  








The Knockdown/knockout RNA-Seq assay for SCP2 is not available on ENCORE database.





107 RBPs can affect the gene expression of SCP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCP2ENSG00000116171.122126.497101582.278500.426403.490302.43600HepG2ABCF1
SCP2ENSG00000116171.121215.378701766.90490-0.5398011.8270010.75750HepG2ACO1
SCP2ENSG00000116171.123219.449205195.48620-0.690407.903107.05470HepG2AKAP1
SCP2ENSG00000116171.121826.813301263.080800.532304.846903.68670HepG2BCLAF1
SCP2ENSG00000116171.121442.582901078.135700.420003.775603.08800HepG2BOP1
SCP2ENSG00000116171.121961.024401368.570200.518803.438202.59080HepG2CALR
SCP2ENSG00000116171.121581.74570989.776900.676208.383907.24160HepG2CPSF6
SCP2ENSG00000116171.121647.983002196.88000-0.414807.056106.11860HepG2CELF1
SCP2ENSG00000116171.122943.581702362.554500.317104.561803.64600HepG2DAZAP1
SCP2ENSG00000116171.121944.264601634.177500.250603.468402.54680HepG2DDX19B
SCP2ENSG00000116171.121860.252401461.612300.347803.397602.37940HepG2DDX24
SCP2ENSG00000116171.121731.114101337.256600.372302.541301.30520HepG2DDX27
SCP2ENSG00000116171.123716.682004977.00780-0.421303.821103.09750HepG2DDX3X
SCP2ENSG00000116171.122005.861301362.784700.557606.250704.78930HepG2DDX5
SCP2ENSG00000116171.122109.681504275.05810-1.0189016.2156014.88320HepG2DDX6
SCP2ENSG00000116171.121850.705601183.440900.645009.023407.35660HepG2DHX30
SCP2ENSG00000116171.122778.142301690.473700.7166011.070109.90180HepG2DKC1
SCP2ENSG00000116171.121476.458601227.018100.266902.576701.89380HepG2DNAJC21
SCP2ENSG00000116171.123134.308104110.00940-0.391003.421502.76650HepG2EIF2S1
SCP2ENSG00000116171.12968.314201200.29200-0.309802.428201.33600HepG2EIF2S2
SCP2ENSG00000116171.121701.786904422.18460-1.3777022.0001020.20450HepG2EIF4B
SCP2ENSG00000116171.123381.794702330.487000.5371012.5085010.98320HepG2EIF4G1
SCP2ENSG00000116171.123174.025602232.514500.507505.630704.49230HepG2EIF4G2
SCP2ENSG00000116171.121790.099201370.652700.385103.338802.14490HepG2ESF1
SCP2ENSG00000116171.121601.634901189.574900.429003.362501.96940HepG2FKBP4
SCP2ENSG00000116171.122112.73290991.495001.091303.061001.99140HepG2FTO
SCP2ENSG00000116171.121709.161002069.53180-0.276002.174601.47010HepG2FUBP3
SCP2ENSG00000116171.121889.218904582.44630-1.2783029.4328027.47880HepG2FXR1
SCP2ENSG00000116171.122034.860804251.11600-1.0629018.5835016.93380HepG2G3BP1
SCP2ENSG00000116171.123465.100504512.81050-0.381103.444602.44430HepG2G3BP2
SCP2ENSG00000116171.121551.488701121.960700.467503.602702.88100HepG2GPKOW
SCP2ENSG00000116171.121128.116001735.23980-0.621204.419803.01990HepG2GRSF1
SCP2ENSG00000116171.12969.539401238.77250-0.353502.806002.15460HepG2HNRNPA1
SCP2ENSG00000116171.12951.841101547.13610-0.700806.302504.11030HepG2HNRNPAB
SCP2ENSG00000116171.121452.357501179.685500.299903.507002.70750HepG2HNRNPF
SCP2ENSG00000116171.122157.702604304.11460-0.9962021.5209019.74710HepG2HNRNPK
SCP2ENSG00000116171.121577.803901070.710400.559205.628604.76390HepG2HNRNPLL
SCP2ENSG00000116171.121732.608701161.655300.576708.734307.51740HepG2IGF2BP1
SCP2ENSG00000116171.123426.646504321.24660-0.334702.678702.01320HepG2IGF2BP2
SCP2ENSG00000116171.121667.855504054.98090-1.281708.455306.81020HepG2IGF2BP3
SCP2ENSG00000116171.12991.519201398.16050-0.495809.937708.63330HepG2ILF2
SCP2ENSG00000116171.122964.052704346.28590-0.552204.542003.22630HepG2KHSRP
SCP2ENSG00000116171.122389.679604584.04420-0.9398015.9629014.44950HepG2MAGOH
SCP2ENSG00000116171.121914.565704609.77020-1.2677024.8452023.11660HepG2MATR3
SCP2ENSG00000116171.121557.896501092.047700.512502.902201.90690HepG2MTPAP
SCP2ENSG00000116171.122611.339804718.41270-0.8535012.9549011.64270HepG2NCBP2
SCP2ENSG00000116171.121876.24690949.410200.9826017.1584015.48450HepG2NSUN2
SCP2ENSG00000116171.122400.165204202.31420-0.8081011.8829010.41280HepG2PABPC4
SCP2ENSG00000116171.12994.787101354.88150-0.445706.541005.32230HepG2PARN
SCP2ENSG00000116171.121848.853504081.11800-1.1423058.9294056.80760HepG2PCBP1
SCP2ENSG00000116171.121727.034801059.827700.7044016.4168014.79060HepG2PRPF4
SCP2ENSG00000116171.121141.156901885.31960-0.724305.541603.86160HepG2PRPF6
SCP2ENSG00000116171.121954.798801102.580300.8260011.395209.91620HepG2PRPF8
SCP2ENSG00000116171.121717.909804152.79160-1.2734069.0684067.20660HepG2PTBP1
SCP2ENSG00000116171.122968.977202236.194900.408804.416703.68400HepG2PUF60
SCP2ENSG00000116171.121576.284302373.69960-0.5906016.2092015.01710HepG2PUM1
SCP2ENSG00000116171.121839.566702372.04030-0.366804.097103.28770HepG2PUM2
SCP2ENSG00000116171.123799.343604497.35960-0.243302.733502.11220HepG2QKI
SCP2ENSG00000116171.123304.711304081.72460-0.304703.176402.45900HepG2RBM25
SCP2ENSG00000116171.122273.009804621.57400-1.0238049.0845047.46290HepG2NELFE
SCP2ENSG00000116171.122326.617404304.52110-0.8876038.0894036.31160HepG2RECQL
SCP2ENSG00000116171.122120.462701270.782800.7386011.2293010.01350HepG2RPLP0
SCP2ENSG00000116171.122749.743101699.879600.693805.336104.04660HepG2RPS10
SCP2ENSG00000116171.12674.407601009.32450-0.581705.334804.51350HepG2RPS19
SCP2ENSG00000116171.121603.925901218.967300.395806.613505.68170HepG2SAFB2
SCP2ENSG00000116171.121637.075001059.775300.627307.532106.41700HepG2SF3B1
SCP2ENSG00000116171.122598.946704323.41010-0.7342026.5761025.06270HepG2SF3B4
SCP2ENSG00000116171.122497.296502143.915800.220002.825602.11670HepG2SLBP
SCP2ENSG00000116171.12920.275901421.54610-0.6273015.2299013.90660HepG2SMN1
SCP2ENSG00000116171.121627.518602720.80870-0.7414016.0798015.13470HepG2SRFBP1
SCP2ENSG00000116171.123114.010104512.77840-0.5352012.5077011.65910HepG2SRSF1
SCP2ENSG00000116171.121473.967801158.995700.346704.453303.60300HepG2SRSF7
SCP2ENSG00000116171.122564.249303671.44960-0.5178014.5809013.49330HepG2SRSF9
SCP2ENSG00000116171.124044.874202362.395400.7757016.7127015.67420HepG2SSB
SCP2ENSG00000116171.121240.582501636.36870-0.399502.425101.40450HepG2STIP1
SCP2ENSG00000116171.121765.869702510.96910-0.5079012.5105011.35020HepG2SUCLG1
SCP2ENSG00000116171.121511.720401078.854600.486605.654404.33340HepG2SUPT6H
SCP2ENSG00000116171.123094.760704056.46740-0.390406.781905.97210HepG2TAF15
SCP2ENSG00000116171.121609.793301043.686600.625107.513806.39490HepG2TARDBP
SCP2ENSG00000116171.122894.530403727.12210-0.364704.455103.40220HepG2TIA1
SCP2ENSG00000116171.12544.843301330.11020-1.2876033.2218031.83650HepG2TIAL1
SCP2ENSG00000116171.12641.87920840.46890-0.388902.401601.69390HepG2UCHL5
SCP2ENSG00000116171.122468.620301693.480000.5436013.6476012.31950HepG2UPF1
SCP2ENSG00000116171.121154.848701634.98840-0.501609.288408.29750HepG2UTP3
SCP2ENSG00000116171.122425.745001862.503800.381108.638507.80990HepG2ZNF622
SCP2ENSG00000116171.122063.118001650.666000.321704.667103.96390K562AGGF1
SCP2ENSG00000116171.122278.403101717.594700.407504.298303.47970K562AKAP8L
SCP2ENSG00000116171.121751.464302491.84970-0.508705.886805.08680K562AQR
SCP2ENSG00000116171.122361.904601802.173900.390105.677304.31230K562ATP5C1
SCP2ENSG00000116171.12355.60040495.42370-0.478402.687001.65270K562CCAR1
SCP2ENSG00000116171.12689.236201393.07940-1.0152014.1152010.91570K562DDX51
SCP2ENSG00000116171.122170.856701848.243000.232002.419701.60850K562DKC1
SCP2ENSG00000116171.121266.030801551.79900-0.293603.339702.00000K562EIF2S1
SCP2ENSG00000116171.121134.715701419.36380-0.322903.428602.54870K562EIF3G
SCP2ENSG00000116171.12930.106601475.98450-0.666208.817107.34910K562EIF4A3
SCP2ENSG00000116171.121008.584401329.20710-0.398204.453302.92810K562EIF4B
SCP2ENSG00000116171.12997.567501288.38600-0.369103.595702.09650K562EWSR1
SCP2ENSG00000116171.12642.023201007.16190-0.649607.489906.55300K562HNRNPC
SCP2ENSG00000116171.122396.862701822.790600.394904.206403.16080K562KIF1C
SCP2ENSG00000116171.121544.728002096.57640-0.440705.040103.89870K562MAGOH
SCP2ENSG00000116171.121609.764802092.43600-0.378304.076002.94010K562MATR3
SCP2ENSG00000116171.122009.631201431.285500.489503.491202.47420K562NAA15
SCP2ENSG00000116171.121526.230701255.419600.281701.971401.33180K562PRPF8
SCP2ENSG00000116171.12654.57830903.01810-0.464203.447002.42330K562PSIP1
SCP2ENSG00000116171.123055.508301703.369200.8429014.7332013.52000K562PUS1
SCP2ENSG00000116171.122143.372701659.687800.368904.843804.07960K562RBM15
SCP2ENSG00000116171.121382.966901953.54910-0.498305.570804.32850K562RBM22
SCP2ENSG00000116171.121140.991301397.87240-0.292903.601801.80230K562RPS10
SCP2ENSG00000116171.12803.676801049.65170-0.385202.489701.54610K562RPS3
SCP2ENSG00000116171.121428.313501693.51050-0.245702.080401.34080K562SF3B4
SCP2ENSG00000116171.121048.582501695.51800-0.693302.956701.58930K562SFPQ
SCP2ENSG00000116171.121536.133701996.75770-0.378404.057403.20750K562SRSF1
SCP2ENSG00000116171.12707.833301013.37910-0.517705.036203.54360K562SRSF4
SCP2ENSG00000116171.12876.584001215.77700-0.471903.353502.22510K562SUPV3L1
SCP2ENSG00000116171.12990.81840820.747100.271601.998901.30160K562SYNCRIP
SCP2ENSG00000116171.121544.231402021.02850-0.388203.357002.57530K562TARDBP
SCP2ENSG00000116171.121517.200601949.46310-0.361702.730501.91930K562TIA1
SCP2ENSG00000116171.12468.37440868.55710-0.891009.687307.84340K562TIAL1
SCP2ENSG00000116171.122295.917402807.25640-0.290102.545801.72450K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCP2 is not available on ENCORE database.





12 RBPs can affect the splicing of SCP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESCP2ENSG00000116171.12chr1+535045885350471853493640534937435351352953513609-0.067000.001050.03898excludedK562PRPF8
SESCP2ENSG00000116171.12chr1+5345892953461672534537005345380853480561534807150.076000.001100.01844includedK562PUS1
SESCP2ENSG00000116171.12chr1+5345892953461672534537005345380853480561534807150.091000.000000.00000includedHepG2PTBP1
SESCP2ENSG00000116171.12chr1+5345892953461672534537005345380853480561534807150.069000.002190.06104includedK562UTP18
SESCP2ENSG00000116171.12chr1+5345892953461672534537005345380853480561534807150.281000.000000.00009includedK562PTBP1
MXESCP2ENSG00000116171.12chr1+53493640534937435350458853504718534806375348071553513529535136090.197000.000130.004391includedHepG2FTO
MXESCP2ENSG00000116171.12chr1+53493640534937435350458853504718534806375348071553513529535136090.108000.000470.021671includedHepG2PTBP1
MXESCP2ENSG00000116171.12chr1+53493640534937435350458853504718534806375348071553513529535136090.087000.003510.060921includedHepG2SRSF1
MXESCP2ENSG00000116171.12chr1+5349364053493743535045885350471853480637534807155351352953513609-0.159000.009710.085712includedK562DROSHA
MXESCP2ENSG00000116171.12chr1+53493640534937435350458853504718534806375348071553513529535136090.101000.000980.050611includedHepG2SRSF9
MXESCP2ENSG00000116171.12chr1+5340746753407525534136805341375253392957533931375341642653416558-0.177000.002860.074342includedHepG2SF3A3
MXESCP2ENSG00000116171.12chr1+5341368053413752534164265341655853407467534075255342041153420476-0.403000.000110.047552includedK562WDR3
MXESCP2ENSG00000116171.12chr1+53407467534075255341368053413752533929575339313753416426534165580.286000.001710.038311includedHepG2DDX55
MXESCP2ENSG00000116171.12chr1+53407467534075255341368053413752533929575339313753416426534165580.291000.003850.086501includedHepG2HNRNPU

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCP2 is not avaliable on ENCORE database.