RTKN

General Information

Gene Name : RTKN
Gene ID : ENSG00000114993.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RTKN)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RTKN	ENSG00000114993.16	1.74	4.08	2.91	ENCSR000AEF
HepG2	RTKN	ENSG00000114993.16	125.95	68.84	97.40	ENCSR985KAT
K562	RTKN	ENSG00000114993.16	3.60	2.46	3.03	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RTKN is not avaliable on ENCORE database.

Proteins bound to RNA

RTKN RNA is bound by 35 proteins.

CanvasJS.com

eCLIP assay for RTKN is not avaliable on ENCORE database.

35 proteins are bound to RTKN RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	74669032	74669217	-	intron-Distal,intron-Proximal	4.60393	56.71010	HepG2	DDX3X
chr2	74653872	74653959	-	intron-Distal	4.43236	49.53408	HepG2	PCBP2
chr2	74656904	74656962	-	CDS,intron-Distal,intron-Proximal	4.28229	42.17744	HepG2	PRPF8
chr2	74669376	74669541	-	intron-Distal	3.70589	33.97873	HepG2	NCBP2
chr2	74655936	74656007	-	CDS,intron-Distal,intron-Proximal	4.50531	33.42852	HepG2	PRPF8
chr2	74655499	74655602	-	CDS,intron-Distal,intron-Proximal	4.38702	32.31792	HepG2	EFTUD2
chr2	74655698	74655791	-	CDS,intron-Distal,intron-Proximal	3.53669	30.78513	HepG2	PRPF8
chr2	74657702	74657803	-	CDS,intron-Distal,intron-Proximal	3.29987	28.88971	HepG2	PRPF8
chr2	74653971	74654045	-	intron-Distal	4.27772	27.23010	HepG2	PTBP1
chr2	74657071	74657133	-	CDS,intron-Distal,intron-Proximal	5.08733	25.97257	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 135 entries

eCLIP assay for RTKN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RTKN is not available on ENCORE database.
63 RBPs can affect the levels of RTKN.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RTKN is not available on ENCORE database.

63 RBPs can affect the gene expression of RTKN :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RTKN	ENSG00000114993.11	1149.61250	2389.15060	-1.05540	33.63490	31.96100	HepG2	TAF15
RTKN	ENSG00000114993.11	1333.92890	2625.22210	-0.97680	31.75620	30.37860	HepG2	RBM22
RTKN	ENSG00000114993.11	2516.30520	1357.62100	0.89010	31.96030	30.30550	HepG2	TRIM56
RTKN	ENSG00000114993.11	1537.52100	2657.99610	-0.78970	26.32250	25.18880	HepG2	SRSF1
RTKN	ENSG00000114993.11	1814.44310	2965.04210	-0.70850	24.48370	23.38000	HepG2	SRFBP1
RTKN	ENSG00000114993.11	3385.57240	2086.05530	0.69850	20.12480	18.71460	HepG2	CELF1
RTKN	ENSG00000114993.11	2150.31160	1235.13560	0.79980	19.47960	17.66250	HepG2	PPIL4
RTKN	ENSG00000114993.11	3257.70690	2253.81310	0.53140	18.46250	17.20540	HepG2	PUM1
RTKN	ENSG00000114993.11	1821.83410	1230.38210	0.56620	14.60060	13.22190	HepG2	DNAJC2
RTKN	ENSG00000114993.11	2826.41790	2035.79470	0.47330	13.09750	11.76450	HepG2	SLBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 66 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RTKN is not available on ENCORE database.

9 RBPs can affect the splicing of RTKN :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RTKN	ENSG00000114993.11	chr2	-	74655394	74655523			74654550	74654719	74655757	74655864	-0.06700	0.00000	0.00001	excluded	HepG2	HNRNPK
A3SS	RTKN	ENSG00000114993.11	chr2	-	74657381	74657541			74657381	74657496	74657591	74657645	0.09500	0.00000	0.00006	longer	HepG2	RBM22
RI	RTKN	ENSG00000114993.11	chr2	-	74657591	74657792			74657591	74657645	74657742	74657792	0.40100	0.00000	0.00004	included	HepG2	U2AF2
RI	RTKN	ENSG00000114993.11	chr2	-	74657591	74657792			74657591	74657645	74657742	74657792	0.11900	0.00000	0.00003	included	HepG2	TAF15
MXE	RTKN	ENSG00000114993.11	chr2	-	74654632	74654719	74655757	74655864	74654295	74654400	74655974	74656069	-0.07700	0.00000	0.00021	2included	HepG2	HNRNPK
MXE	RTKN	ENSG00000114993.11	chr2	-	74654632	74654719	74655394	74655523	74654295	74654400	74655757	74655864	-0.06600	0.00002	0.00106	2included	HepG2	HNRNPK
SE	RTKN	ENSG00000114993.11	chr2	-	74655394	74655523			74654550	74654719	74655757	74655864	-0.07500	0.00005	0.00155	excluded	HepG2	U2AF1
MXE	RTKN	ENSG00000114993.11	chr2	-	74654632	74654719	74655394	74655523	74654295	74654400	74655757	74655864	-0.08600	0.00005	0.00158	2included	HepG2	U2AF1
SE	RTKN	ENSG00000114993.11	chr2	-	74655394	74655442			74654632	74654719	74655757	74655864	-0.08900	0.00011	0.00408	excluded	HepG2	SRSF1
A3SS	RTKN	ENSG00000114993.11	chr2	-	74657742	74657944			74657742	74657804	74659593	74659793	0.10600	0.00023	0.01146	longer	HepG2	U2AF1

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RTKN

General Information

Functions

Localization

Domains (AlphaFold: RTKN)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RTKN is not avaliable on ENCORE database.

35 proteins are bound to RTKN RNA:

eCLIP assay for RTKN is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RTKN is not available on ENCORE database.

63 RBPs can affect the gene expression of RTKN :

The Knockdown/knockout RNA-Seq assay for RTKN is not available on ENCORE database.

9 RBPs can affect the splicing of RTKN :

The Knockdown/knockout RNA-Seq assay for RTKN is not avaliable on ENCORE database.