RPUSD3

General Information

Gene Name       : RPUSD3
Gene ID             : ENSG00000156990.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RPUSD3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPUSD3ENSG00000156990.1414.6322.9918.81ENCSR000AEF
HepG2RPUSD3ENSG00000156990.1429.9722.5426.25ENCSR985KAT
K562RPUSD3ENSG00000156990.1485.9666.0876.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RPUSD3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RPUSD3 RNA is bound by 10 proteins.  







eCLIP assay for RPUSD3 is not avaliable on ENCORE database.





10 proteins are bound to RPUSD3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr398796589879743-3'-UTR,CDS,intron-Distal,intron-Proximal3.336785.00851HepG2LARP4
chr398795619879642-3'-UTR,intron-Distal,intron-Proximal6.5595412.00747K562PABPC4
chr398796429879694-3'-UTR,intron-Distal,intron-Proximal3.843993.08128K562IGF2BP1
chr398797029879743-3'-UTR,CDS,intron-Distal,intron-Proximal3.434084.62971K562PABPC4
chr398796429879702-3'-UTR,intron-Distal,intron-Proximal3.982516.92152K562PABPC4
chr398837719883839-3'-UTR,intron-Distal,intron-Proximal3.814115.42009HepG2EFTUD2
chr398796429879737-3'-UTR,CDS,intron-Distal,intron-Proximal4.376277.11103K562PCBP1
chr398797409879807-3'-UTR,CDS,intron-Distal,intron-Proximal3.507943.82829K562IGF2BP2
chr398838819883923-3'-UTR,CDS,intron-Distal,intron-Proximal4.033664.32914K562YBX3
chr398807209880850-3'-UTR,CDS,intron-Distal3.5108110.70078K562YBX3
chr398797379879836-3'-UTR,CDS,intron-Distal,intron-Proximal3.740775.44885K562PCBP1
chr398855629885695-5'-UTR,CDS,intron-Distal,intron-Proximal4.337364.78731HepG2NCBP2
chr398856039885676-5'-UTR,CDS,intron-Distal,intron-Proximal3.372995.21590K562DDX3X
chr398807609880947-CDS,intron-Distal,intron-Proximal3.654203.67894HepG2AQR
chr398808239880938-CDS,intron-Distal,intron-Proximal3.759226.79537K562AQR
chr398823819882432-CDS,intron-Distal,intron-Proximal3.506914.91258K562YBX3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RPUSD3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RPUSD3 is not available on ENCORE database.

  • 62 RBPs can affect the levels of RPUSD3.  








The Knockdown/knockout RNA-Seq assay for RPUSD3 is not available on ENCORE database.





62 RBPs can affect the gene expression of RPUSD3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RPUSD3ENSG00000156990.10266.59210367.54370-0.463302.500701.76450HepG2CALR
RPUSD3ENSG00000156990.10232.41140339.83420-0.548102.155601.53900HepG2CPSF6
RPUSD3ENSG00000156990.10396.57430563.71860-0.507403.066702.41350HepG2DDX3X
RPUSD3ENSG00000156990.10366.99960255.127200.524503.429702.65240HepG2DNAJC21
RPUSD3ENSG00000156990.10372.51390252.870100.558804.676803.86450HepG2DNAJC2
RPUSD3ENSG00000156990.10357.81600500.94280-0.485402.153701.54440HepG2EIF4B
RPUSD3ENSG00000156990.10351.48700820.26460-1.2226026.1092024.58120HepG2ETF1
RPUSD3ENSG00000156990.10327.05460481.51700-0.558103.350402.62290HepG2G3BP1
RPUSD3ENSG00000156990.10578.13260466.754900.308602.630801.97310HepG2HNRNPL
RPUSD3ENSG00000156990.10393.65340284.605100.467903.322502.66340HepG2HNRNPU
RPUSD3ENSG00000156990.10402.04200290.714900.467603.927203.06920HepG2ILF2
RPUSD3ENSG00000156990.10364.17010253.845200.520603.493202.67520HepG2PPIL4
RPUSD3ENSG00000156990.10361.94990485.09290-0.422502.299301.74880HepG2PUF60
RPUSD3ENSG00000156990.10336.38820514.98500-0.614406.232505.41680HepG2PUM1
RPUSD3ENSG00000156990.10508.70740685.58260-0.430503.720903.14350HepG2RBM22
RPUSD3ENSG00000156990.10353.59460510.92410-0.531003.822203.03900HepG2RBM25
RPUSD3ENSG00000156990.10396.21560578.49910-0.546004.951404.26410HepG2NELFE
RPUSD3ENSG00000156990.10386.99790253.454200.610505.165804.33480HepG2SAFB2
RPUSD3ENSG00000156990.10426.59200541.17650-0.343202.250701.71070HepG2SF3B4
RPUSD3ENSG00000156990.10491.41590774.32820-0.656009.507408.73080HepG2SRFBP1
RPUSD3ENSG00000156990.10377.95300564.88060-0.579704.580604.01040HepG2SRSF1
RPUSD3ENSG00000156990.10314.81050479.00350-0.605602.582001.97260HepG2SRSF5
RPUSD3ENSG00000156990.10360.43620459.56870-0.350502.208201.70360HepG2SRSF9
RPUSD3ENSG00000156990.10483.49360672.27900-0.475605.017004.36610HepG2SSB
RPUSD3ENSG00000156990.10201.33440296.08530-0.556402.668002.00220HepG2SUPV3L1
RPUSD3ENSG00000156990.10356.65750279.018800.354102.009601.51430HepG2TRIM56
RPUSD3ENSG00000156990.10562.98180384.977100.548205.318004.53240HepG2UTP3
RPUSD3ENSG00000156990.10288.80540402.24850-0.478003.614202.86280HepG2ZC3H8
RPUSD3ENSG00000156990.101708.793101463.622000.223302.249501.72940K562AGGF1
RPUSD3ENSG00000156990.10993.04840799.106600.313402.996001.42470K562AKAP1
RPUSD3ENSG00000156990.10898.626001737.84650-0.9515015.2184013.99400K562AQR
RPUSD3ENSG00000156990.101970.993901597.924100.302603.344302.33160K562ATP5C1
RPUSD3ENSG00000156990.10547.01490862.66070-0.657205.302904.08390K562BOP1
RPUSD3ENSG00000156990.10747.98640917.20540-0.294202.128101.43170K562CPSF6
RPUSD3ENSG00000156990.102026.385801638.877500.306103.664002.63620K562DKC1
RPUSD3ENSG00000156990.10774.214501027.10900-0.407803.048001.63800K562DNAJC21
RPUSD3ENSG00000156990.10544.84190919.89400-0.755608.664106.96680K562EFTUD2
RPUSD3ENSG00000156990.10995.342501229.08120-0.304303.063502.31310K562EIF2S2
RPUSD3ENSG00000156990.10536.11490984.73100-0.877209.146707.12440K562EIF3D
RPUSD3ENSG00000156990.10636.74020517.807800.298202.005501.31930K562EIF3G
RPUSD3ENSG00000156990.101606.042002116.94670-0.398504.998503.75440K562EIF4G2
RPUSD3ENSG00000156990.101259.35470999.027200.334002.482601.68060K562FIP1L1
RPUSD3ENSG00000156990.10710.185001054.31330-0.570004.915803.34100K562FKBP4
RPUSD3ENSG00000156990.10560.55620933.33240-0.735508.265306.74040K562FMR1
RPUSD3ENSG00000156990.10518.95010791.12580-0.608304.881303.63190K562FTO
RPUSD3ENSG00000156990.10182.72300495.25770-1.4385012.6071010.86580K562G3BP2
RPUSD3ENSG00000156990.10699.51740875.66500-0.324002.101501.40540K562GPKOW
RPUSD3ENSG00000156990.10334.409601213.88050-1.8599050.0280047.64840K562HNRNPC
RPUSD3ENSG00000156990.101648.255401354.446500.283102.011001.32770K562HSPD1
RPUSD3ENSG00000156990.10439.27090747.81460-0.767604.158502.99160K562KRR1
RPUSD3ENSG00000156990.101772.735102256.35480-0.348003.506202.23500K562MSI2
RPUSD3ENSG00000156990.101262.109101477.44140-0.227302.302401.56310K562MTPAP
RPUSD3ENSG00000156990.101062.750801437.00530-0.435303.213902.31750K562PCBP3
RPUSD3ENSG00000156990.10810.000501102.17160-0.444402.986202.15380K562POLR2G
RPUSD3ENSG00000156990.101498.155601134.116300.401503.462002.52850K562PPIG
RPUSD3ENSG00000156990.10443.81790895.16770-1.0122013.1913011.54400K562PRPF8
RPUSD3ENSG00000156990.101777.782602309.66810-0.377603.732002.78780K562PUF60
RPUSD3ENSG00000156990.101730.467602457.26550-0.505906.383104.70770K562PUM1
RPUSD3ENSG00000156990.101973.823102407.05070-0.286303.746802.62740K562PUM2
RPUSD3ENSG00000156990.101187.009901510.43240-0.347602.284301.78110K562PUS1
RPUSD3ENSG00000156990.10261.34870472.47330-0.854304.461202.60220K562RAVER1
RPUSD3ENSG00000156990.10283.22220469.45480-0.729106.581504.45250K562RBM25
RPUSD3ENSG00000156990.10837.22970633.991100.401102.365801.44870K562RPS3
RPUSD3ENSG00000156990.101175.837701619.80310-0.462104.403803.39310K562SF3A3
RPUSD3ENSG00000156990.10494.67340832.93560-0.751706.572305.03770K562SF3B1
RPUSD3ENSG00000156990.101430.02180941.508900.602907.060905.20510K562SRFBP1
RPUSD3ENSG00000156990.10600.88290866.46070-0.528103.968602.73630K562SUPV3L1
RPUSD3ENSG00000156990.101402.392701112.326000.334202.689001.75900K562TRIM56
RPUSD3ENSG00000156990.10690.92500917.16960-0.408702.962701.90150K562UCHL5
RPUSD3ENSG00000156990.101008.262601321.60110-0.390402.725301.53350K562UTP3
RPUSD3ENSG00000156990.101285.690401548.77300-0.268603.375602.45000K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RPUSD3 is not available on ENCORE database.





11 RBPs can affect the splicing of RPUSD3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERPUSD3ENSG00000156990.10chr3-988514898852859883882988392798855739885670-0.273000.000860.03336excludedK562PRPF8
SERPUSD3ENSG00000156990.10chr3-988071598808559879848987989198818679882019-0.096000.002820.07965excludedK562PRPF8
SERPUSD3ENSG00000156990.10chr3-988066898808179879532987989198818679882019-0.317000.000050.02111excludedK562WDR43
SERPUSD3ENSG00000156990.10chr3-988514898852859883882988392798854999885679-0.086000.003630.03578excludedK562AQR
SERPUSD3ENSG00000156990.10chr3-988071598808559879848987989198818679882019-0.095000.000010.00086excludedK562FXR1
SERPUSD3ENSG00000156990.10chr3-9880715988085598798489879891988186798820190.077000.000250.04677includedHepG2RBM15
SERPUSD3ENSG00000156990.10chr3-988066898808179879532987989198818679882019-0.364000.000190.05559excludedK562PPIL4
SERPUSD3ENSG00000156990.10chr3-988514898852859883882988392798855739885670-0.194000.004320.09427excludedHepG2SF3A3
SERPUSD3ENSG00000156990.10chr3-988071598808559879848987989198818679882019-0.107000.000100.00642excludedK562PTBP1
SERPUSD3ENSG00000156990.10chr3-988071598808559879848987989198818679882019-0.191000.000000.00000excludedK562HNRNPC
A5SSRPUSD3ENSG00000156990.10chr3-988514898857029885499988570298838829883927-0.087000.003460.05333shorterK562AQR
A5SSRPUSD3ENSG00000156990.10chr3-9880668988085598807159880855987953298798910.071000.001490.09951longerHepG2RBM22
RIRPUSD3ENSG00000156990.10chr3-9883686988392798836869883766988388298839270.194000.000020.00052includedK562U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RPUSD3 is not avaliable on ENCORE database.