RAB5B

General Information

Gene Name : RAB5B
Gene ID : ENSG00000111540.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RAB5B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RAB5B	ENSG00000111540.15	49.39	45.40	47.39	ENCSR000AEF
HepG2	RAB5B	ENSG00000111540.15	26.47	38.03	32.25	ENCSR985KAT
K562	RAB5B	ENSG00000111540.15	28.71	33.22	30.96	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RAB5B is not avaliable on ENCORE database.

Proteins bound to RNA

RAB5B RNA is bound by 22 proteins.

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eCLIP assay for RAB5B is not avaliable on ENCORE database.

22 proteins are bound to RAB5B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	56387329	56387440	+	3'-UTR	4.45553	400.00000	K562	PUM2
chr12	56386579	56386658	+	3'-UTR	3.39981	26.36689	K562	UPF1
chr12	56374056	56374135	+	intron-Distal	5.80973	23.24609	HepG2	PTBP1
chr12	56386320	56386428	+	3'-UTR	3.62670	18.30059	K562	UPF1
chr12	56386550	56386579	+	3'-UTR	3.91671	15.62843	K562	UPF1
chr12	56380694	56380772	+	3'-UTR,CDS	6.00540	15.30086	HepG2	PCBP2
chr12	56388424	56388460	+	3'-UTR	3.79112	14.77584	K562	PUM2
chr12	56387009	56387067	+	3'-UTR	4.53028	14.60766	K562	FAM120A
chr12	56386571	56386659	+	3'-UTR	3.28575	13.56184	K562	FAM120A
chr12	56374059	56374127	+	intron-Distal	5.32207	13.53269	K562	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 60 entries

eCLIP assay for RAB5B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RAB5B is not available on ENCORE database.
99 RBPs can affect the levels of RAB5B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RAB5B is not available on ENCORE database.

99 RBPs can affect the gene expression of RAB5B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RAB5B	ENSG00000111540.11	624.37290	2321.37490	-1.89450	79.90890	76.74540	HepG2	RBM15
RAB5B	ENSG00000111540.11	1044.14090	2476.12470	-1.24580	33.65270	29.54960	K562	APOBEC3C
RAB5B	ENSG00000111540.11	969.38590	2675.46510	-1.46460	30.97520	28.82520	HepG2	G3BP1
RAB5B	ENSG00000111540.11	1246.19690	2789.74810	-1.16260	28.25080	26.70230	HepG2	SF3B4
RAB5B	ENSG00000111540.11	3184.72410	1953.43970	0.70510	25.21430	23.70030	HepG2	PUS1
RAB5B	ENSG00000111540.11	1050.98400	1773.69720	-0.75500	22.91410	21.07600	HepG2	DDX19B
RAB5B	ENSG00000111540.11	3519.43300	2175.33870	0.69400	22.24110	20.63490	HepG2	AUH
RAB5B	ENSG00000111540.11	911.13150	1782.51280	-0.96820	20.95080	18.79180	HepG2	HNRNPM
RAB5B	ENSG00000111540.11	1388.24290	2709.29670	-0.96470	18.38930	16.74000	HepG2	HNRNPK
RAB5B	ENSG00000111540.11	3660.89630	2451.29990	0.57850	14.69780	13.68350	HepG2	ZNF622
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RAB5B is not available on ENCORE database.

8 RBPs can affect the splicing of RAB5B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	RAB5B	ENSG00000111540.11	chr12	+	56383730	56383882	56384465	56384588	56380652	56380907	56385143	56385237	-0.16800	0.00008	0.00801	2included	HepG2	BCCIP
SE	RAB5B	ENSG00000111540.11	chr12	+	56373155	56373258			56367867	56367923	56380652	56380907	-0.20900	0.00018	0.04527	excluded	K562	SBDS
SE	RAB5B	ENSG00000111540.11	chr12	+	56373155	56373258			56367867	56367923	56380652	56380907	-0.11500	0.00040	0.00798	excluded	K562	PUS1
MXE	RAB5B	ENSG00000111540.11	chr12	+	56383730	56383882	56384465	56384588	56380652	56380907	56385143	56385237	-0.12000	0.00231	0.06663	2included	HepG2	SUPV3L1
SE	RAB5B	ENSG00000111540.11	chr12	+	56373155	56373258			56367867	56367923	56380652	56380907	-0.60900	0.00296	0.08493	excluded	K562	TARDBP
MXE	RAB5B	ENSG00000111540.11	chr12	+	56383730	56383882	56384465	56384588	56380652	56380907	56385143	56385237	-0.10200	0.00323	0.05382	2included	HepG2	FTO
MXE	RAB5B	ENSG00000111540.11	chr12	+	56383730	56383882	56384465	56384588	56380652	56380907	56385143	56385237	0.14100	0.00347	0.03711	1included	HepG2	SFPQ
MXE	RAB5B	ENSG00000111540.11	chr12	+	56383730	56383882	56384465	56384588	56380652	56380907	56385143	56385237	-0.12600	0.00487	0.08272	2included	K562	PPIL4

Showing 1 to 8 of 8 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RAB5B

General Information

Functions

Localization

Domains (AlphaFold: RAB5B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RAB5B is not avaliable on ENCORE database.

22 proteins are bound to RAB5B RNA:

eCLIP assay for RAB5B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RAB5B is not available on ENCORE database.

99 RBPs can affect the gene expression of RAB5B :

The Knockdown/knockout RNA-Seq assay for RAB5B is not available on ENCORE database.

8 RBPs can affect the splicing of RAB5B :

The Knockdown/knockout RNA-Seq assay for RAB5B is not avaliable on ENCORE database.