QTRT1

General Information

Gene Name : QTRT1
Gene ID : ENSG00000213339.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: QTRT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	QTRT1	ENSG00000213339.8	2.55	9.67	6.11	ENCSR000AEF
HepG2	QTRT1	ENSG00000213339.8	62.11	10.57	36.34	ENCSR985KAT
K562	QTRT1	ENSG00000213339.8	31.79	13.01	22.40	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for QTRT1 is not avaliable on ENCORE database.

Proteins bound to RNA

QTRT1 RNA is bound by 15 proteins.

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eCLIP assay for QTRT1 is not avaliable on ENCORE database.

15 proteins are bound to QTRT1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	10822986	10823135	+	3'-UTR,intron-Distal,intron-Proximal	4.40951	24.45790	HepG2	RBFOX2
chr19	10817984	10818055	+	3'-UTR,CDS	4.75945	17.29219	HepG2	PPIG
chr19	10822983	10823120	+	3'-UTR,intron-Distal,intron-Proximal	3.81762	15.34816	HepG2	PPIG
chr19	10818262	10818336	+	3'-UTR,CDS,intron-Proximal	4.32206	13.85817	HepG2	PRPF8
chr19	10823151	10823228	+	3'-UTR,intron-Proximal	3.31565	13.79580	HepG2	PRPF8
chr19	10822893	10822955	+	3'-UTR,CDS	3.82480	12.47924	HepG2	PPIG
chr19	10822974	10823142	+	3'-UTR,CDS,intron-Distal,intron-Proximal	3.84111	12.30399	HepG2	LSM11
chr19	10822837	10822893	+	3'-UTR,CDS	3.70051	11.77700	HepG2	PPIG
chr19	10822986	10823135	+	3'-UTR,intron-Distal,intron-Proximal	3.56748	9.96082	HepG2	PRPF4
chr19	10823153	10823234	+	3'-UTR,CDS,intron-Proximal	3.76816	9.39605	HepG2	PRPF4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 35 entries

eCLIP assay for QTRT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for QTRT1 is not available on ENCORE database.
86 RBPs can affect the levels of QTRT1.

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The Knockdown/knockout RNA-Seq assay for QTRT1 is not available on ENCORE database.

86 RBPs can affect the gene expression of QTRT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
QTRT1	ENSG00000213339.4	436.78320	175.33390	1.31670	20.14340	18.79820	HepG2	TRIM56
QTRT1	ENSG00000213339.4	361.79670	159.26170	1.18370	14.35620	13.05910	HepG2	SAFB2
QTRT1	ENSG00000213339.4	709.10560	399.15010	0.82900	12.77690	11.60480	HepG2	SUCLG1
QTRT1	ENSG00000213339.4	650.41740	377.33000	0.78540	12.01370	10.96110	HepG2	PUM1
QTRT1	ENSG00000213339.4	362.68480	127.29820	1.51040	11.29120	9.66430	K562	EIF3G
QTRT1	ENSG00000213339.4	444.85890	842.72220	-0.92170	10.16360	9.14690	K562	AQR
QTRT1	ENSG00000213339.4	578.21760	342.12040	0.75700	9.91570	8.71570	HepG2	HNRNPL
QTRT1	ENSG00000213339.4	382.16040	173.93320	1.13550	9.67750	8.26090	HepG2	UCHL5
QTRT1	ENSG00000213339.4	462.35840	200.39790	1.20600	9.87420	8.02470	K562	MATR3
QTRT1	ENSG00000213339.4	384.70480	173.74670	1.14670	8.67500	7.87900	HepG2	TIAL1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 92 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for QTRT1 is not available on ENCORE database.

28 RBPs can affect the splicing of QTRT1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	QTRT1	ENSG00000213339.4	chr19	+	10817385	10817501	10812791	10812930	10817977	10818056	0.43800	0.00000	0.00000	included	K562	HNRNPC
RI	QTRT1	ENSG00000213339.4	chr19	+	10822836	10823304	10822836	10822975	10823228	10823304	0.28100	0.00000	0.00017	included	HepG2	MATR3
RI	QTRT1	ENSG00000213339.4	chr19	+	10812625	10812930	10812625	10812694	10812791	10812930	0.26900	0.00000	0.00000	included	HepG2	RBM22
RI	QTRT1	ENSG00000213339.4	chr19	+	10812625	10812930	10812625	10812694	10812791	10812930	0.18300	0.00000	0.00000	included	K562	AQR
RI	QTRT1	ENSG00000213339.4	chr19	+	10822836	10823304	10822836	10822975	10823228	10823304	0.30500	0.00001	0.00069	included	K562	HNRNPC
RI	QTRT1	ENSG00000213339.4	chr19	+	10822836	10823304	10822836	10822975	10823228	10823304	0.28800	0.00001	0.00022	included	HepG2	TAF15
RI	QTRT1	ENSG00000213339.4	chr19	+	10812625	10812930	10812625	10812694	10812791	10812930	-0.15000	0.00001	0.00658	excluded	K562	DDX21
RI	QTRT1	ENSG00000213339.4	chr19	+	10822836	10823304	10822836	10822975	10823228	10823304	0.32200	0.00001	0.00033	included	HepG2	TIAL1
RI	QTRT1	ENSG00000213339.4	chr19	+	10822836	10823304	10822836	10822975	10823228	10823304	0.28100	0.00001	0.00015	included	HepG2	RBM22
RI	QTRT1	ENSG00000213339.4	chr19	+	10822836	10823304	10822836	10822975	10823228	10823304	0.32300	0.00001	0.00026	included	K562	EFTUD2

Showing 1 to 10 of 42 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

QTRT1

General Information

Functions

Localization

Domains (AlphaFold: QTRT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for QTRT1 is not avaliable on ENCORE database.

15 proteins are bound to QTRT1 RNA:

eCLIP assay for QTRT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for QTRT1 is not available on ENCORE database.

86 RBPs can affect the gene expression of QTRT1 :

The Knockdown/knockout RNA-Seq assay for QTRT1 is not available on ENCORE database.

28 RBPs can affect the splicing of QTRT1 :

The Knockdown/knockout RNA-Seq assay for QTRT1 is not avaliable on ENCORE database.