PACRGL

General Information

Gene Name : PACRGL
Gene ID : ENSG00000163138.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PACRGL)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PACRGL	ENSG00000163138.18	7.75	4.61	6.18	ENCSR000AEF
HepG2	PACRGL	ENSG00000163138.18	6.95	9.77	8.36	ENCSR985KAT
K562	PACRGL	ENSG00000163138.18	18.98	18.50	18.74	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PACRGL is not avaliable on ENCORE database.

Proteins bound to RNA

PACRGL RNA is bound by 12 proteins.

CanvasJS.com

eCLIP assay for PACRGL is not avaliable on ENCORE database.

12 proteins are bound to PACRGL RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	20713884	20713937	+	intron-Distal	5.52959	18.60841	K562	PTBP1
chr4	20714974	20715063	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.74286	9.87931	HepG2	U2AF2
chr4	20713884	20713930	+	intron-Distal	5.39108	9.74894	HepG2	PTBP1
chr4	20714959	20715050	+	intron-Distal,intron-Proximal	4.50970	7.08280	K562	SF3B4
chr4	20729893	20730024	+	3'-UTR,intron-Distal,polyA_site	3.52765	5.40624	K562	KHSRP
chr4	20705875	20706035	+	intron-Distal,intron-Proximal	4.25283	5.19823	K562	KHSRP
chr4	20713758	20713819	+	intron-Distal	3.91382	5.16181	K562	PTBP1
chr4	20717157	20717260	+	intron-Distal	4.47311	5.08856	K562	ILF3
chr4	20714946	20715040	+	intron-Distal,intron-Proximal	4.68556	5.05386	K562	PTBP1
chr4	20746437	20746547	+	intron-Distal	4.28050	4.84127	HepG2	CSTF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 19 entries

eCLIP assay for PACRGL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PACRGL is not available on ENCORE database.
44 RBPs can affect the levels of PACRGL.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PACRGL is not available on ENCORE database.

44 RBPs can affect the gene expression of PACRGL :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PACRGL	ENSG00000163138.14	277.74270	94.39450	1.55690	10.65330	9.67670	HepG2	AKAP1
PACRGL	ENSG00000163138.14	220.49900	92.02590	1.26060	9.58610	8.58030	HepG2	UTP3
PACRGL	ENSG00000163138.14	221.70840	92.39350	1.26270	8.30790	7.58910	HepG2	SRSF1
PACRGL	ENSG00000163138.14	272.10980	473.41150	-0.79890	8.45850	7.30330	K562	EIF2S2
PACRGL	ENSG00000163138.14	254.68450	427.84620	-0.74840	7.48910	6.37830	K562	UPF1
PACRGL	ENSG00000163138.14	72.61230	181.22080	-1.31950	6.82560	5.88720	HepG2	HNRNPLL
PACRGL	ENSG00000163138.14	62.33740	167.50570	-1.42600	6.85370	5.80790	HepG2	CPSF6
PACRGL	ENSG00000163138.14	87.17650	173.00990	-0.98880	5.33250	4.37730	HepG2	HNRNPF
PACRGL	ENSG00000163138.14	85.28040	170.36770	-0.99840	4.99120	4.04570	HepG2	IGF2BP1
PACRGL	ENSG00000163138.14	171.55450	83.28010	1.04250	4.75620	3.90360	HepG2	MAGOH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 50 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PACRGL is not available on ENCORE database.

23 RBPs can affect the splicing of PACRGL :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PACRGL	ENSG00000163138.14	chr4	+	20726430	20726511	20715054	20715162	20728907	20729125	0.44100	0.00001	included	HepG2	AKAP1
SE	PACRGL	ENSG00000163138.14	chr4	+	20726430	20726511	20715054	20715162	20728907	20729125	0.33800	0.00845	included	K562	NONO
SE	PACRGL	ENSG00000163138.14	chr4	+	20726430	20726511	20715054	20715162	20728907	20729125	0.41900	0.00025	included	HepG2	DDX3X
SE	PACRGL	ENSG00000163138.14	chr4	+	20709425	20709493	20706282	20706437	20715054	20715162	-0.71800	0.00000	excluded	K562	PUS1
SE	PACRGL	ENSG00000163138.14	chr4	+	20726430	20726511	20715054	20715162	20728907	20729125	0.51000	0.00012	included	HepG2	MATR3
SE	PACRGL	ENSG00000163138.14	chr4	+	20726430	20726511	20715054	20715162	20728907	20729125	0.63100	0.00000	included	HepG2	IGF2BP3
SE	PACRGL	ENSG00000163138.14	chr4	+	20726430	20726511	20715054	20715162	20728907	20729125	0.19600	0.00185	included	K562	EIF4G2
SE	PACRGL	ENSG00000163138.14	chr4	+	20726430	20726511	20715054	20715162	20728907	20729125	0.27800	0.00023	included	K562	TARDBP
SE	PACRGL	ENSG00000163138.14	chr4	+	20726430	20726511	20715054	20715162	20728907	20729125	-0.28600	0.00000	excluded	K562	HNRNPC
A5SS	PACRGL	ENSG00000163138.14	chr4	+	20702081	20702410	20702081	20702329	20706088	20706156	-0.36500	0.00038	shorter	K562	UTP18

Showing 1 to 10 of 38 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PACRGL

General Information

Functions

Localization

Domains (AlphaFold: PACRGL)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PACRGL is not avaliable on ENCORE database.

12 proteins are bound to PACRGL RNA:

eCLIP assay for PACRGL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PACRGL is not available on ENCORE database.

44 RBPs can affect the gene expression of PACRGL :

The Knockdown/knockout RNA-Seq assay for PACRGL is not available on ENCORE database.

23 RBPs can affect the splicing of PACRGL :

The Knockdown/knockout RNA-Seq assay for PACRGL is not avaliable on ENCORE database.