NDUFS6

General Information

Gene Name : NDUFS6
Gene ID : ENSG00000145494.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NDUFS6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NDUFS6	ENSG00000145494.11	7.66	19.98	13.82	ENCSR000AEF
HepG2	NDUFS6	ENSG00000145494.11	67.70	30.38	49.04	ENCSR985KAT
K562	NDUFS6	ENSG00000145494.11	82.08	49.18	65.63	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	NDUFS6-BGRSLV04-RS293		NDUFS6	Ribo-STAMP-293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
NDUFS6	Ribo-STAMP-293T	shRNA			NDUFS6-BGRSLV04-23,NDUFS6-BGRSLV04-24	NT-BGRSLV04-1,NT-BGRSLV04-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NDUFS6 is not avaliable on ENCORE database.

Proteins bound to RNA

NDUFS6 RNA is bound by 30 proteins.

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eCLIP assay for NDUFS6 is not avaliable on ENCORE database.

30 proteins are bound to NDUFS6 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	1815975	1816030	+	3'-UTR,CDS	6.77453	400.00000	K562	PABPC4
chr5	1816030	1816075	+	3'-UTR	6.63811	400.00000	K562	PABPC4
chr5	1801604	1801665	+	CDS,intron-Proximal	4.68091	400.00000	K562	DDX3X
chr5	1814488	1814577	+	CDS,intron-Proximal	5.03648	400.00000	K562	PUM2
chr5	1803532	1803640	+	intron-Distal	8.03111	71.41220	K562	HNRNPM
chr5	1801548	1801604	+	CDS	4.30659	55.52138	K562	DDX3X
chr5	1815963	1815981	+	CDS,intron-Proximal	5.12496	46.28348	K562	PUM2
chr5	1804176	1804244	+	intron-Distal	7.39930	39.56674	K562	EXOSC5
chr5	1815981	1816009	+	CDS	5.12880	36.84297	K562	PUM2
chr5	1803436	1803506	+	intron-Distal	5.67255	36.01965	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 113 entries

eCLIP assay for NDUFS6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NDUFS6 is not available on ENCORE database.
97 RBPs can affect the levels of NDUFS6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NDUFS6 is not available on ENCORE database.

97 RBPs can affect the gene expression of NDUFS6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NDUFS6	ENSG00000145494.7	1491.39620	2537.15950	-0.76660	18.50340	16.82490	K562	UPF1
NDUFS6	ENSG00000145494.7	1654.54140	2392.81210	-0.53230	16.51200	14.89710	K562	NSUN2
NDUFS6	ENSG00000145494.7	3072.00950	1727.63840	0.83030	13.22760	12.08530	K562	PUS1
NDUFS6	ENSG00000145494.7	188.52920	514.45380	-1.44830	13.48450	11.66970	K562	G3BP2
NDUFS6	ENSG00000145494.7	738.85310	1294.62370	-0.80920	12.65030	11.45030	K562	HNRNPC
NDUFS6	ENSG00000145494.7	2112.92450	1100.46170	0.94100	13.52220	11.04340	K562	HNRNPM
NDUFS6	ENSG00000145494.7	569.40760	1116.49020	-0.97140	12.76030	10.63950	K562	TIAL1
NDUFS6	ENSG00000145494.7	2994.77440	1742.44270	0.78120	11.69070	10.22250	K562	AKAP8L
NDUFS6	ENSG00000145494.7	352.09710	180.04290	0.96750	10.15100	9.03810	HepG2	SAFB2
NDUFS6	ENSG00000145494.7	735.97860	456.34070	0.68950	9.46840	8.46850	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 108 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NDUFS6 is not available on ENCORE database.

1 RBPs can affect the splicing of NDUFS6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
A5SS	NDUFS6	ENSG00000145494.7	chr5	+	1801534	1801645			1801534	1801618	1802434	1802488	-0.05700	0.00001	0.00598	shorter	K562	HNRNPL

Showing 1 to 1 of 1 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NDUFS6

General Information

Functions

Localization

Domains (AlphaFold: NDUFS6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NDUFS6 is not avaliable on ENCORE database.

30 proteins are bound to NDUFS6 RNA:

eCLIP assay for NDUFS6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NDUFS6 is not available on ENCORE database.

97 RBPs can affect the gene expression of NDUFS6 :

The Knockdown/knockout RNA-Seq assay for NDUFS6 is not available on ENCORE database.

1 RBPs can affect the splicing of NDUFS6 :

The Knockdown/knockout RNA-Seq assay for NDUFS6 is not avaliable on ENCORE database.