L3HYPDH

General Information

Gene Name       : L3HYPDH
Gene ID             : ENSG00000126790.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: L3HYPDH)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878L3HYPDHENSG00000126790.1110.677.869.27ENCSR000AEF
HepG2L3HYPDHENSG00000126790.1114.7220.5217.62ENCSR985KAT
K562L3HYPDHENSG00000126790.118.198.638.41ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for L3HYPDH is not avaliable on ENCORE database.



Proteins bound to RNA
  • L3HYPDH RNA is bound by 17 proteins.  







eCLIP assay for L3HYPDH is not avaliable on ENCORE database.





17 proteins are bound to L3HYPDH RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr145994602359946074-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.436384.20763HepG2U2AF2
chr145995098859951085-5'-UTR,CDS,intron-Distal3.372793.40321HepG2GRWD1
chr145995055459950642-5'-UTR,CDS,intron-Distal3.946213.60441HepG2GRWD1
chr145995036159950468-5'-UTR,intron-Distal,intron-Proximal3.8921311.71568HepG2QKI
chr145995098059951107-5'-UTR,CDS,intron-Distal4.1003712.15891HepG2NCBP2
chr145994262759942677-CDS,intron-Distal,intron-Proximal3.831783.01428K562UCHL5
chr145994280959942845-CDS,intron-Distal,intron-Proximal3.124043.39306HepG2GRWD1
chr145994267759942727-CDS,intron-Distal,intron-Proximal3.077804.91547HepG2GRWD1
chr145994254959942623-CDS,intron-Distal,intron-Proximal5.0365623.13012HepG2PRPF8
chr145994280959942869-CDS,intron-Distal,intron-Proximal3.352509.25770HepG2BCLAF1
chr145994262159942663-CDS,intron-Distal,intron-Proximal3.922595.36555HepG2BCLAF1
chr145994265859942727-CDS,intron-Distal,intron-Proximal3.834647.69921HepG2PPIG
chr145994269159942726-CDS,intron-Distal,intron-Proximal4.723047.97334HepG2BCLAF1
chr145994255559942610-CDS,intron-Distal,intron-Proximal3.458025.03897K562PRPF8
chr145994024459940294-intron-Distal4.214823.41738HepG2PTBP1
chr145994024159940286-intron-Distal4.305633.45799HepG2U2AF2
chr145994209159942164-intron-Distal3.242493.93901K562KHSRP
chr145994025059940288-intron-Distal4.713093.55787K562PTBP1
chr145994250159942555-intron-Distal,intron-Proximal3.630954.21588K562PRPF8
chr145993213659932203-intron-Distal,intron-Proximal6.0809118.42616HepG2NKRF
chr145994237059942469-intron-Distal3.855033.71397K562KHSRP
chr145994039259940437-intron-Distal5.495978.60492HepG2PCBP2
chr145993212159932195-intron-Distal,intron-Proximal4.9565511.45619HepG2XRN2
chr145994248959942554-intron-Distal,intron-Proximal3.212877.48835K562TIA1
chr145994050359940565-intron-Distal3.127147.09164HepG2PCBP2
chr145994141859941474-intron-Distal4.388415.14742HepG2HNRNPL
chr145995005959950105-intron-Distal3.330003.35377HepG2QKI
chr145994251059942587-intron-Distal,intron-Proximal4.932624.48002K562AQR
chr145993202559932084-5'-UTR,intron-Distal,intron-Proximal4.774825.22630HepG2SLTM
chr145992875859928846-3'-UTR,intron-Distal3.259473.93901K562KHSRP
chr145993192159932019-5'-UTR,CDS,intron-Distal4.007155.65212HepG2SLTM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for L3HYPDH is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for L3HYPDH is not available on ENCORE database.

  • 52 RBPs can affect the levels of L3HYPDH.  








The Knockdown/knockout RNA-Seq assay for L3HYPDH is not available on ENCORE database.





52 RBPs can affect the gene expression of L3HYPDH :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
L3HYPDHENSG00000126790.7181.53280251.03380-0.467702.356001.64270HepG2AKAP8L
L3HYPDHENSG00000126790.7351.17100227.806900.624302.957301.94860HepG2CCAR1
L3HYPDHENSG00000126790.7117.19400191.91670-0.711602.387501.68020HepG2CNOT7
L3HYPDHENSG00000126790.7256.04500167.617500.611103.147502.17140HepG2DDX24
L3HYPDHENSG00000126790.7114.94610213.70420-0.894704.336503.56810HepG2DDX3X
L3HYPDHENSG00000126790.7338.90300176.475400.941306.418505.53600HepG2EIF2S1
L3HYPDHENSG00000126790.7403.24010189.898401.086307.101606.02790HepG2EIF4B
L3HYPDHENSG00000126790.7329.04210458.00230-0.477103.471102.80930HepG2ETF1
L3HYPDHENSG00000126790.7119.92940228.83630-0.932104.158103.22980HepG2FIP1L1
L3HYPDHENSG00000126790.787.72160168.68340-0.943302.372401.43810HepG2FTO
L3HYPDHENSG00000126790.7307.94710193.818700.667903.521402.51010HepG2G3BP2
L3HYPDHENSG00000126790.7826.86510282.261701.5505045.6446043.31120HepG2HNRNPL
L3HYPDHENSG00000126790.7106.01520157.84910-0.574302.140201.30370HepG2HNRNPM
L3HYPDHENSG00000126790.7276.71180185.539900.576602.577801.92410HepG2IGF2BP2
L3HYPDHENSG00000126790.7400.16220196.870401.023208.005806.90190HepG2MAGOH
L3HYPDHENSG00000126790.7306.62030197.965300.631102.885502.24230HepG2MATR3
L3HYPDHENSG00000126790.7125.75200202.62290-0.688202.776602.14310HepG2NCBP2
L3HYPDHENSG00000126790.7230.16280307.26190-0.416802.114901.44610HepG2NOL12
L3HYPDHENSG00000126790.7299.32430175.116600.773305.864705.03370HepG2PCBP1
L3HYPDHENSG00000126790.7128.08230293.30990-1.195409.672508.65070HepG2PUF60
L3HYPDHENSG00000126790.7123.91130192.98480-0.639202.751702.12840HepG2QKI
L3HYPDHENSG00000126790.7286.35850185.206100.628602.917802.09790HepG2RPS2
L3HYPDHENSG00000126790.7280.02010192.672700.539302.145501.44080HepG2RPS3A
L3HYPDHENSG00000126790.7130.32370256.08160-0.974505.610204.62980HepG2SF3A3
L3HYPDHENSG00000126790.7335.02510206.975600.694703.643402.53060HepG2SMNDC1
L3HYPDHENSG00000126790.7121.64300194.02160-0.673602.357601.44260HepG2SRSF3
L3HYPDHENSG00000126790.7209.06280289.60300-0.470102.541201.93670HepG2SRSF5
L3HYPDHENSG00000126790.7138.00700232.86810-0.754803.989503.17670HepG2SRSF7
L3HYPDHENSG00000126790.7226.69060157.533800.525002.680502.13540HepG2SRSF9
L3HYPDHENSG00000126790.7242.41030154.469300.650003.208302.20080HepG2SUPT6H
L3HYPDHENSG00000126790.7243.87890174.044200.486602.149901.64400HepG2TAF15
L3HYPDHENSG00000126790.779.73010221.67460-1.475204.117002.90170HepG2U2AF2
L3HYPDHENSG00000126790.7260.60520119.821001.120908.176206.87380HepG2UCHL5
L3HYPDHENSG00000126790.7156.76900227.10530-0.534702.768202.06810HepG2UPF1
L3HYPDHENSG00000126790.792.20680191.15030-1.051806.070805.28190K562AGGF1
L3HYPDHENSG00000126790.778.30580198.89700-1.344808.708307.48050K562AKAP8L
L3HYPDHENSG00000126790.7139.03730214.04920-0.622503.240102.28270K562DKC1
L3HYPDHENSG00000126790.7106.17410164.92000-0.635302.385601.59830K562FIP1L1
L3HYPDHENSG00000126790.772.99290196.78690-1.430805.681703.69520K562HNRNPA2B1
L3HYPDHENSG00000126790.7295.61640195.526100.596303.446802.25050K562HNRNPL
L3HYPDHENSG00000126790.772.00000135.65540-0.913903.195702.19080K562HNRNPM
L3HYPDHENSG00000126790.781.79870147.44450-0.850003.069401.96820K562IGF2BP2
L3HYPDHENSG00000126790.798.10760211.09160-1.105406.462005.07840K562KIF1C
L3HYPDHENSG00000126790.7133.20410202.05680-0.601102.378301.40760K562MAK16
L3HYPDHENSG00000126790.7125.47010236.47420-0.914305.136403.82010K562MBNL1
L3HYPDHENSG00000126790.781.96070165.75020-1.016003.852102.76390K562NAA15
L3HYPDHENSG00000126790.763.01540172.23810-1.450605.060403.60960K562PABPN1
L3HYPDHENSG00000126790.774.18180120.91330-0.704801.943201.30810K562PRPF8
L3HYPDHENSG00000126790.7177.05690363.71370-1.038606.092604.88340K562PUF60
L3HYPDHENSG00000126790.763.20170197.27610-1.6422010.849709.82220K562PUS1
L3HYPDHENSG00000126790.766.93120134.24840-1.004204.523102.19510K562QKI
L3HYPDHENSG00000126790.779.23690192.19530-1.278308.104907.12010K562RBM15
L3HYPDHENSG00000126790.794.59120144.40050-0.610302.200401.45500K562RBM22
L3HYPDHENSG00000126790.755.76500113.81350-1.029203.748802.16830K562RBM25
L3HYPDHENSG00000126790.754.85820157.57670-1.522304.669402.97600K562SF1
L3HYPDHENSG00000126790.760.16930124.75720-1.052004.598403.48570K562SF3B4
L3HYPDHENSG00000126790.793.19770192.19200-1.044202.811301.49480K562SFPQ
L3HYPDHENSG00000126790.752.65830180.87300-1.780207.048404.77060K562SNRNP200
L3HYPDHENSG00000126790.771.58200147.61240-1.044104.804803.87840K562SRSF1
L3HYPDHENSG00000126790.7258.07300178.665500.530402.844602.11620K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for L3HYPDH is not available on ENCORE database.





8 RBPs can affect the splicing of L3HYPDH :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEL3HYPDHENSG00000126790.7chr14-5994115659941244599396885993980859942586599427240.234000.000030.00388includedHepG2RBM22
SEL3HYPDHENSG00000126790.7chr14-5994115659941244599396885993980859942586599427240.132000.000240.02995includedHepG2DDX59
SEL3HYPDHENSG00000126790.7chr14-5994115659941244599396885993980859942586599427240.418000.000000.00558includedHepG2FAM120A
SEL3HYPDHENSG00000126790.7chr14-599411565994124459939688599398085994258659942724-0.205000.000570.03278excludedHepG2PTBP1
SEL3HYPDHENSG00000126790.7chr14-5994115659941244599396885993980859942586599427240.124000.000580.06129includedHepG2LARP4
SEL3HYPDHENSG00000126790.7chr14-5994115659941244599396885993980859942586599427240.479000.000000.00000includedHepG2HNRNPL
SEL3HYPDHENSG00000126790.7chr14-5994115659941244599396885993980859942586599427240.145000.001650.09117includedK562HNRNPL
SEL3HYPDHENSG00000126790.7chr14-5994115659941244599396885993980859942586599427240.121000.000010.00432includedHepG2RBFOX2
SEL3HYPDHENSG00000126790.7chr14-5994115659941244599396885993980859942586599427240.307000.000160.04357includedHepG2EIF3D

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for L3HYPDH is not avaliable on ENCORE database.