KCNE3

General Information

Gene Name       : KCNE3
Gene ID             : ENSG00000175538.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KCNE3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KCNE3ENSG00000175538.100.000.000.00ENCSR000AEF
HepG2KCNE3ENSG00000175538.102.891.892.39ENCSR985KAT
K562KCNE3ENSG00000175538.106.065.325.69ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KCNE3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • KCNE3 RNA is bound by 1 proteins.  







eCLIP assay for KCNE3 is not avaliable on ENCORE database.





1 proteins are bound to KCNE3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr117416732574167378-3'-UTR,intron-Distal4.4267212.03763K562UPF1
chr117416724574167276-3'-UTR,intron-Distal4.190133.69433K562UPF1
chr117416711374167177-3'-UTR,intron-Distal5.130337.60978K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KCNE3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KCNE3 is not available on ENCORE database.

  • 104 RBPs can affect the levels of KCNE3.  








The Knockdown/knockout RNA-Seq assay for KCNE3 is not available on ENCORE database.





104 RBPs can affect the gene expression of KCNE3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KCNE3ENSG00000175538.618.42350188.81160-3.3573024.3898022.98390HepG2AKAP1
KCNE3ENSG00000175538.694.1951035.550101.405703.719902.84330HepG2AKAP8L
KCNE3ENSG00000175538.6302.24760156.222100.952006.121004.97470HepG2ASCC1
KCNE3ENSG00000175538.6105.1321059.256200.827102.706802.02780HepG2AUH
KCNE3ENSG00000175538.6114.6401042.535201.430304.936203.76540HepG2BCLAF1
KCNE3ENSG00000175538.64.3033036.67370-3.091205.589304.77480HepG2BOP1
KCNE3ENSG00000175538.6387.87710148.422901.3858013.2866011.73180HepG2CIRBP
KCNE3ENSG00000175538.680.0149035.374701.177503.835603.07700HepG2CKAP4
KCNE3ENSG00000175538.6344.1389051.184002.7491016.2363014.44100HepG2CNOT7
KCNE3ENSG00000175538.6234.5603082.084901.5147013.8221012.59980HepG2CELF1
KCNE3ENSG00000175538.6137.0516088.262800.634702.495701.78580HepG2DAZAP1
KCNE3ENSG00000175538.6338.80610180.859500.905505.872404.99280HepG2DDX3X
KCNE3ENSG00000175538.6123.6224050.908201.279905.617903.81750HepG2DDX47
KCNE3ENSG00000175538.6257.20460155.380300.727003.233902.57200HepG2DDX6
KCNE3ENSG00000175538.6121.6744052.927901.200802.082601.46370HepG2DNAJC21
KCNE3ENSG00000175538.657.34920165.04360-1.525008.389007.27780HepG2EIF4A3
KCNE3ENSG00000175538.680.11770160.70980-1.004303.605902.82600HepG2EIF4B
KCNE3ENSG00000175538.6127.9217044.686801.517206.267003.46510HepG2FASTKD1
KCNE3ENSG00000175538.698.3807040.062301.296003.893002.40360HepG2FKBP4
KCNE3ENSG00000175538.635.7192074.07050-1.052202.633301.54370HepG2FUS
KCNE3ENSG00000175538.658.67320166.54850-1.505208.155307.01470HepG2FXR1
KCNE3ENSG00000175538.655.82520164.02300-1.554908.401206.83110HepG2G3BP2
KCNE3ENSG00000175538.6150.9893070.992701.088603.879602.21800HepG2HLTF
KCNE3ENSG00000175538.6201.6242081.115401.313509.592308.05160HepG2HNRNPA2B1
KCNE3ENSG00000175538.613.8775042.26720-1.606803.174001.67160HepG2HNRNPAB
KCNE3ENSG00000175538.620.3671059.43760-1.545103.465702.69530HepG2HNRNPC
KCNE3ENSG00000175538.674.82090156.46180-1.064304.503603.63120HepG2HNRNPK
KCNE3ENSG00000175538.653.8777025.503301.078902.365301.48500HepG2HNRNPM
KCNE3ENSG00000175538.6176.3247059.044601.5783011.6444010.47230HepG2HNRNPU
KCNE3ENSG00000175538.688.42910157.02490-0.828403.166302.44960HepG2IGF2BP2
KCNE3ENSG00000175538.616.40080147.38100-3.1677011.532609.65450HepG2IGF2BP3
KCNE3ENSG00000175538.6417.35090157.949501.4017011.968509.80650HepG2KHSRP
KCNE3ENSG00000175538.635.52000104.56390-1.557702.344601.58450HepG2LARP4
KCNE3ENSG00000175538.636.2111071.79520-0.987502.441301.38060HepG2LARP7
KCNE3ENSG00000175538.633.6283075.37820-1.164503.139401.84640HepG2LIN28B
KCNE3ENSG00000175538.655.21420166.60680-1.593308.937907.77210HepG2MAGOH
KCNE3ENSG00000175538.642.44960167.53490-1.9806011.2888010.07780HepG2MATR3
KCNE3ENSG00000175538.6165.1718029.922202.4646016.8445015.04540HepG2MSI2
KCNE3ENSG00000175538.663.0818025.120101.328303.704902.29840HepG2NAA15
KCNE3ENSG00000175538.675.62190171.47780-1.181105.736804.84010HepG2NCBP2
KCNE3ENSG00000175538.6102.6727044.203901.215703.197602.01760HepG2NONO
KCNE3ENSG00000175538.679.49820152.69610-0.941703.890803.04610HepG2PABPC4
KCNE3ENSG00000175538.6110.58980163.96920-0.568202.381701.80980HepG2PCBP1
KCNE3ENSG00000175538.616.1923045.90130-1.503203.148301.52800HepG2PNPT1
KCNE3ENSG00000175538.6260.50840166.829700.642903.499802.90020HepG2PTBP1
KCNE3ENSG00000175538.637.1251088.68760-1.256304.590103.86760HepG2PUM1
KCNE3ENSG00000175538.6142.6236088.623100.686402.455901.82440HepG2PUM2
KCNE3ENSG00000175538.6244.9897036.046702.7647022.3591020.91690HepG2PUS1
KCNE3ENSG00000175538.6761.31450180.712902.0747047.9225045.94350HepG2QKI
KCNE3ENSG00000175538.627.6855067.66590-1.289302.652601.96190HepG2RAVER1
KCNE3ENSG00000175538.682.74560163.99640-0.986904.840603.97090HepG2RBM25
KCNE3ENSG00000175538.647.9881086.57410-0.851302.296501.40150HepG2RBM27
KCNE3ENSG00000175538.656.00000185.67800-1.7293012.3802011.39060HepG2NELFE
KCNE3ENSG00000175538.672.20690172.91100-1.259807.565506.62030HepG2RECQL
KCNE3ENSG00000175538.659.36570173.71840-1.5490010.145809.11910HepG2SF3B4
KCNE3ENSG00000175538.6132.9466040.125401.728202.719001.94430HepG2SNRNP70
KCNE3ENSG00000175538.644.83890181.31330-2.0157015.0582014.14370HepG2SRSF1
KCNE3ENSG00000175538.6137.7170037.814401.864608.873606.55630HepG2SUGP2
KCNE3ENSG00000175538.664.60030162.94070-1.334707.827406.96240HepG2TAF15
KCNE3ENSG00000175538.6177.9769067.943601.389206.639604.43110HepG2TRA2A
KCNE3ENSG00000175538.691.9759057.886000.667901.876501.39420HepG2TRIM56
KCNE3ENSG00000175538.6105.1860026.570301.9850010.312309.11470HepG2UPF1
KCNE3ENSG00000175538.698.8127027.308601.855208.417206.70490HepG2UTP18
KCNE3ENSG00000175538.614.2133044.97660-1.661903.642602.88940HepG2ZC3H8
KCNE3ENSG00000175538.683.8758029.221901.521105.877205.15810HepG2ZNF622
KCNE3ENSG00000175538.6103.41940176.84120-0.773903.279101.97870K562AARS
KCNE3ENSG00000175538.6100.39330472.04390-2.2333015.6625014.42580K562AGGF1
KCNE3ENSG00000175538.6342.45010518.61680-0.598802.588501.64410K562AKAP8
KCNE3ENSG00000175538.6121.59350491.16140-2.0141012.1447010.64310K562AKAP8L
KCNE3ENSG00000175538.6159.57720365.73490-1.196509.049608.08640K562AQR
KCNE3ENSG00000175538.6246.17930515.30560-1.065706.711305.20510K562ATP5C1
KCNE3ENSG00000175538.6127.18300247.36600-0.959706.583604.42840K562BCCIP
KCNE3ENSG00000175538.6370.74900564.18870-0.605703.084801.83010K562CCDC124
KCNE3ENSG00000175538.6548.39200327.325700.744403.870002.57390K562CNOT7
KCNE3ENSG00000175538.6250.69830352.60990-0.492103.090501.91620K562CPEB4
KCNE3ENSG00000175538.6330.22650233.957500.497102.504901.35670K562DDX21
KCNE3ENSG00000175538.6185.55490364.91310-0.9757010.100308.94560K562DDX47
KCNE3ENSG00000175538.6298.78570528.66060-0.823204.565203.40040K562DKC1
KCNE3ENSG00000175538.663.03800139.89520-1.150102.368701.44460K562EIF3A
KCNE3ENSG00000175538.6125.12270244.60120-0.967105.379803.87480K562EIF3D
KCNE3ENSG00000175538.6120.26220202.96610-0.755104.028703.07810K562EIF3G
KCNE3ENSG00000175538.689.65750153.03460-0.771403.215202.33330K562EIF4A3
KCNE3ENSG00000175538.6230.21290160.336100.521802.100601.31000K562FTO
KCNE3ENSG00000175538.6118.76850179.43130-0.595302.966201.57010K562FUS
KCNE3ENSG00000175538.6106.37960159.14930-0.581202.186501.63720K562FXR1
KCNE3ENSG00000175538.6332.73160177.555000.906006.609405.38620K562GPKOW
KCNE3ENSG00000175538.6188.14490397.26310-1.078305.004703.20970K562HNRNPA2B1
KCNE3ENSG00000175538.6127.54040193.47670-0.601202.338101.78300K562HNRNPC
KCNE3ENSG00000175538.697.16120182.87400-0.912402.377901.51770K562HNRNPM
KCNE3ENSG00000175538.6549.83330301.327800.867607.176705.90850K562HSPD1
KCNE3ENSG00000175538.6145.12060254.44770-0.810104.028402.69400K562IGF2BP2
KCNE3ENSG00000175538.6127.70360258.74380-1.018707.736005.61740K562IGF2BP3
KCNE3ENSG00000175538.6232.76610138.830300.745503.602401.91030K562KHDRBS1
KCNE3ENSG00000175538.6240.85630521.32090-1.114005.948104.63400K562KIF1C
KCNE3ENSG00000175538.6116.32140196.25110-0.754603.260001.64190K562LIN28B
KCNE3ENSG00000175538.6110.77260267.25630-1.2706011.144109.37960K562MAGOH
KCNE3ENSG00000175538.6269.71850498.97080-0.887503.407902.17580K562MAK16
KCNE3ENSG00000175538.6267.95880584.00050-1.124004.269803.09870K562MBNL1
KCNE3ENSG00000175538.6123.59250409.33540-1.727707.677305.91740K562NAA15
KCNE3ENSG00000175538.6314.05690469.35190-0.579603.939302.13820K562NOL12
KCNE3ENSG00000175538.6412.87380294.480500.487403.686002.83830K562NSUN2
KCNE3ENSG00000175538.6161.95260347.61240-1.101904.813203.40350K562PABPN1
KCNE3ENSG00000175538.6158.25460261.31690-0.723603.813402.21690K562PCBP1
KCNE3ENSG00000175538.6116.56010237.76300-1.028506.523605.00560K562PCBP2
KCNE3ENSG00000175538.6157.62480277.07930-0.813804.475603.41910K562PCBP3
KCNE3ENSG00000175538.698.62320212.53640-1.107707.150005.87560K562POLR2G
KCNE3ENSG00000175538.673.16250222.29010-1.6033010.868109.36790K562PRPF8
KCNE3ENSG00000175538.698.86630259.66810-1.3931013.0834011.69600K562PTBP1
KCNE3ENSG00000175538.6335.14130468.14850-0.482203.027202.17330K562PUF60
KCNE3ENSG00000175538.6280.15330497.98710-0.829908.456806.50760K562PUM1
KCNE3ENSG00000175538.6375.91060487.89020-0.376202.381101.48930K562PUM2
KCNE3ENSG00000175538.666.84540487.25220-2.8658019.9963018.56440K562PUS1
KCNE3ENSG00000175538.6130.36140474.62550-1.8643011.5257010.32820K562RBM15
KCNE3ENSG00000175538.6124.57450199.88670-0.682203.755801.92200K562RPS10
KCNE3ENSG00000175538.6104.27180226.44190-1.118806.090504.87330K562RPS19
KCNE3ENSG00000175538.691.80870190.22960-1.051004.719402.67180K562SERBP1
KCNE3ENSG00000175538.681.65760317.96930-1.961209.839007.11580K562SF1
KCNE3ENSG00000175538.679.99120151.53860-0.921804.414303.32360K562SF3B4
KCNE3ENSG00000175538.6152.62560365.06110-1.258105.890803.88050K562SNRNP200
KCNE3ENSG00000175538.692.23240254.57900-1.4648011.7850010.33180K562SRSF1
KCNE3ENSG00000175538.6127.99820213.16970-0.735903.756502.79950K562SYNCRIP
KCNE3ENSG00000175538.680.59370141.28920-0.809902.838801.73140K562U2AF1
KCNE3ENSG00000175538.6180.14060493.86630-1.455004.934903.04130K562UTP18
KCNE3ENSG00000175538.6158.75940324.25070-1.030307.829705.88470K562UTP3
KCNE3ENSG00000175538.6204.89750277.81090-0.439202.470201.66810K562WDR43
KCNE3ENSG00000175538.684.37530160.08080-0.923903.163801.45120K562XRCC6
KCNE3ENSG00000175538.6695.92370411.992600.756207.899506.31610K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KCNE3 is not available on ENCORE database.





1 RBPs can affect the splicing of KCNE3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKCNE3ENSG00000175538.6chr11-741729997417314874165885741686487417844274178673-0.222000.000450.00881excludedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KCNE3 is not avaliable on ENCORE database.