GTF3C1

General Information

Gene Name : GTF3C1
Gene ID : ENSG00000077235.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GTF3C1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GTF3C1	ENSG00000077235.17	11.85	26.32	19.09	ENCSR000AEF
HepG2	GTF3C1	ENSG00000077235.17	86.25	70.56	78.41	ENCSR985KAT
K562	GTF3C1	ENSG00000077235.17	29.76	30.89	30.33	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GTF3C1 is not avaliable on ENCORE database.

Proteins bound to RNA

GTF3C1 RNA is bound by 39 proteins.

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eCLIP assay for GTF3C1 is not avaliable on ENCORE database.

39 proteins are bound to GTF3C1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	27472170	27472282	-	3'-UTR,intron-Distal	6.99313	34.58889	HepG2	UPF1
chr16	27472596	27472688	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.21695	32.76180	HepG2	UPF1
chr16	27530974	27531037	-	intron-Distal	6.48854	22.99132	HepG2	PTBP1
chr16	27472085	27472170	-	3'-UTR,intron-Distal	6.35930	22.12221	HepG2	UPF1
chr16	27472533	27472596	-	3'-UTR,intron-Distal,intron-Proximal	5.51345	21.20565	HepG2	UPF1
chr16	27535884	27535975	-	intron-Distal	4.47553	20.31627	HepG2	QKI
chr16	27496007	27496104	-	intron-Distal	4.84323	18.96359	HepG2	QKI
chr16	27487729	27487797	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.14851	17.45859	HepG2	PRPF8
chr16	27497379	27497473	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.15078	17.03352	HepG2	PPIG
chr16	27475662	27475759	-	CDS,intron-Distal,intron-Proximal	4.04373	16.80068	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 216 entries

eCLIP assay for GTF3C1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GTF3C1 is not available on ENCORE database.
60 RBPs can affect the levels of GTF3C1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GTF3C1 is not available on ENCORE database.

60 RBPs can affect the gene expression of GTF3C1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GTF3C1	ENSG00000077235.13	5951.38790	4014.29320	0.56800	23.25910	21.74070	HepG2	SUCLG1
GTF3C1	ENSG00000077235.13	4871.85300	3529.80150	0.46480	12.23870	11.04860	HepG2	SRSF5
GTF3C1	ENSG00000077235.13	4896.32320	3795.01290	0.36750	11.40360	10.37120	HepG2	PUM1
GTF3C1	ENSG00000077235.13	1776.77280	2943.96340	-0.72850	11.43990	9.85020	K562	HSPD1
GTF3C1	ENSG00000077235.13	6533.54990	4226.82530	0.62820	10.48520	9.41810	HepG2	BOP1
GTF3C1	ENSG00000077235.13	3216.02490	2179.48900	0.56120	8.93270	7.90350	HepG2	RPS19
GTF3C1	ENSG00000077235.13	3583.17820	2755.78020	0.37870	8.03140	7.03890	HepG2	HNRNPU
GTF3C1	ENSG00000077235.13	4684.71980	3453.79000	0.43970	8.00320	7.02480	HepG2	QKI
GTF3C1	ENSG00000077235.13	2798.24130	4197.69540	-0.58510	7.54330	6.56200	HepG2	HNRNPLL
GTF3C1	ENSG00000077235.13	2830.21590	3668.94230	-0.37450	7.19110	6.01290	HepG2	PRPF4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 64 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GTF3C1 is not available on ENCORE database.

9 RBPs can affect the splicing of GTF3C1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	GTF3C1	ENSG00000077235.13	chr16	-	27481543	27481782	27481543	27481716	27483068	27483241	0.17400	0.00000	0.00000	longer	K562	AQR
A3SS	GTF3C1	ENSG00000077235.13	chr16	-	27480722	27480889	27480722	27480871	27481428	27481716	0.09800	0.00000	0.00000	longer	K562	AQR
A5SS	GTF3C1	ENSG00000077235.13	chr16	-	27475640	27476157	27475715	27476157	27474861	27474913	-0.49200	0.00000	0.00000	shorter	HepG2	RBM22
RI	GTF3C1	ENSG00000077235.13	chr16	-	27474861	27476157	27474861	27474913	27475640	27476157	0.79900	0.00000	0.00000	included	HepG2	U2AF2
RI	GTF3C1	ENSG00000077235.13	chr16	-	27474861	27476157	27474861	27474913	27475715	27476157	-0.50600	0.00000	0.00000	excluded	HepG2	RBM22
A3SS	GTF3C1	ENSG00000077235.13	chr16	-	27473730	27473873	27473730	27473807	27474861	27474913	0.13700	0.00005	0.00043	longer	K562	AQR
A3SS	GTF3C1	ENSG00000077235.13	chr16	-	27539918	27540097	27539918	27540042	27544611	27544743	0.07100	0.00024	0.00192	longer	K562	AQR
RI	GTF3C1	ENSG00000077235.13	chr16	-	27474861	27476157	27474861	27474913	27475640	27476157	0.41800	0.00033	0.00508	included	HepG2	RBM22
A3SS	GTF3C1	ENSG00000077235.13	chr16	-	27549104	27549282	27549104	27549248	27549500	27549677	0.10000	0.00038	0.00293	longer	K562	AQR
RI	GTF3C1	ENSG00000077235.13	chr16	-	27474861	27476157	27474861	27474913	27475640	27476157	0.38200	0.00047	0.00731	included	HepG2	SF3A3

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GTF3C1

General Information

Functions

Localization

Domains (AlphaFold: GTF3C1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GTF3C1 is not avaliable on ENCORE database.

39 proteins are bound to GTF3C1 RNA:

eCLIP assay for GTF3C1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GTF3C1 is not available on ENCORE database.

60 RBPs can affect the gene expression of GTF3C1 :

The Knockdown/knockout RNA-Seq assay for GTF3C1 is not available on ENCORE database.

9 RBPs can affect the splicing of GTF3C1 :

The Knockdown/knockout RNA-Seq assay for GTF3C1 is not avaliable on ENCORE database.