FBXO42

General Information

Gene Name       : FBXO42
Gene ID             : ENSG00000037637.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FBXO42)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FBXO42ENSG00000037637.106.4310.198.31ENCSR000AEF
HepG2FBXO42ENSG00000037637.106.288.307.29ENCSR985KAT
K562FBXO42ENSG00000037637.1015.0616.6915.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FBXO42 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FBXO42 RNA is bound by 25 proteins.  







eCLIP assay for FBXO42 is not avaliable on ENCORE database.





25 proteins are bound to FBXO42 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11657691416576969-3'-UTR,intron-Distal8.2519378.13280K562PABPC4
chr11667886316678931-5'-UTR,intron-Distal3.638685.06399K562DDX3X
chr11664177116641915-5'-UTR,CDS,intron-Distal,intron-Proximal3.1900112.88649K562UCHL5
chr11657987016579943-5'-UTR,intron-Distal,intron-Proximal4.600915.17894K562PRPF8
chr11657960416579676-5'-UTR,CDS,intron-Distal,intron-Proximal3.486076.21987K562AQR
chr11664190516641983-5'-UTR,CDS,intron-Distal,intron-Proximal3.332236.04408K562SF3B4
chr11657883816578930-CDS,intron-Distal,intron-Proximal3.792567.22920K562AQR
chr11662121516621309-CDS,intron-Distal,intron-Proximal5.300775.68502HepG2PRPF8
chr11657791516577994-CDS,intron-Distal4.436564.15208K562RBM15
chr11657823616578287-CDS,intron-Distal3.503714.51027K562BUD13
chr11658018216580261-CDS,intron-Distal,intron-Proximal3.825298.92446K562BUD13
chr11663229016632344-CDS,intron-Distal,intron-Proximal3.051133.17233HepG2BCLAF1
chr11662123316621281-CDS,intron-Distal,intron-Proximal5.188277.28294K562AQR
chr11664167616641760-CDS,intron-Distal4.081073.84295K562GRWD1
chr11663229416632364-CDS,intron-Distal,intron-Proximal3.872793.31827HepG2GRWD1
chr11657954416579596-CDS,intron-Distal,intron-Proximal5.4089813.75908K562AQR
chr11658305216583103-CDS,intron-Distal,intron-Proximal4.667364.13847K562AQR
chr11657884916578916-CDS,intron-Distal,intron-Proximal4.915937.52401K562BUD13
chr11663241316632470-CDS,intron-Distal,intron-Proximal3.472874.50936K562SF3B4
chr11664166516641775-CDS,intron-Distal4.568546.78401HepG2GRWD1
chr11657874916578784-CDS,intron-Distal,intron-Proximal4.234826.77156K562AQR
chr11663234416632426-CDS,intron-Distal,intron-Proximal3.156344.34695HepG2BCLAF1
chr11665373016653799-intron-Distal4.116853.52314K562DGCR8
chr11666515216665214-intron-Distal3.103543.14580K562ILF3
chr11665244416652535-intron-Distal3.9803511.71070K562HNRNPL
chr11667810116678189-intron-Distal3.156453.20028K562TARDBP
chr11665241616652522-intron-Distal3.4825613.97807K562AGGF1
chr11663967616639753-intron-Distal4.365516.48743K562PTBP1
chr11667783716677872-intron-Distal3.919596.56262K562TIA1
chr11667773116677776-intron-Distal3.877933.30664K562NONO
chr11663504016635108-intron-Distal3.103543.14580K562ILF3
chr11664519016645274-intron-Distal3.875843.23532K562MATR3
chr11659760216597665-intron-Distal3.327836.13559K562AGGF1
chr11667856616678612-intron-Distal4.244613.82910K562NONO
chr11664012016640189-intron-Distal5.313683.96837K562XRCC6
chr11667746916677547-intron-Distal3.6573514.59843K562KHSRP
chr11667856616678630-intron-Distal4.313184.62429HepG2NKRF
chr11667785416677941-intron-Distal4.015734.06464HepG2CSTF2
chr11666123616661336-intron-Distal5.176639.43874K562TARDBP
chr11665344716653527-intron-Distal3.671253.00956K562HNRNPA1
chr11659749116597623-intron-Distal4.713094.90095K562PTBP1
chr11659771716597805-intron-Distal3.816125.12089K562HNRNPL
chr11667806116678153-intron-Distal3.220524.09304K562EXOSC5
chr11667719616677243-intron-Distal3.232127.00576K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FBXO42 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FBXO42 is not available on ENCORE database.

  • 46 RBPs can affect the levels of FBXO42.  








The Knockdown/knockout RNA-Seq assay for FBXO42 is not available on ENCORE database.





46 RBPs can affect the gene expression of FBXO42 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FBXO42ENSG00000037637.6696.64050530.025400.394303.697202.92450HepG2AUH
FBXO42ENSG00000037637.6360.72760263.399300.453602.241701.69750HepG2BOP1
FBXO42ENSG00000037637.6427.87380519.19910-0.279101.888801.32490HepG2CKAP4
FBXO42ENSG00000037637.6803.80530547.552300.553703.666002.96320HepG2DDX6
FBXO42ENSG00000037637.6357.85740496.88200-0.473503.346202.61140HepG2DKC1
FBXO42ENSG00000037637.6869.06170608.495800.514106.491305.63460HepG2ETF1
FBXO42ENSG00000037637.6416.29920551.26870-0.405102.232301.60000HepG2HNRNPK
FBXO42ENSG00000037637.6361.66290476.86130-0.398903.089302.45110HepG2HNRNPU
FBXO42ENSG00000037637.6378.50060474.73350-0.326802.312401.37880HepG2KIF1C
FBXO42ENSG00000037637.6288.08060472.01000-0.712307.298306.02900HepG2PARN
FBXO42ENSG00000037637.6272.99000425.32200-0.639705.561804.54770HepG2PPIL4
FBXO42ENSG00000037637.6489.34000632.48920-0.370202.431101.86680HepG2PUF60
FBXO42ENSG00000037637.6468.44700671.39980-0.519306.474905.64720HepG2PUM1
FBXO42ENSG00000037637.6730.48370508.599100.522205.537304.86780HepG2RBM22
FBXO42ENSG00000037637.6431.23430589.11870-0.450103.840003.12940HepG2RECQL
FBXO42ENSG00000037637.6325.80530482.96760-0.567902.972802.14540HepG2RPS3A
FBXO42ENSG00000037637.6294.69630424.66560-0.527104.344203.56880HepG2SAFB2
FBXO42ENSG00000037637.6452.40790591.74960-0.387402.965902.35770HepG2SF3B4
FBXO42ENSG00000037637.6349.15420495.23110-0.504204.737603.93320HepG2SMN1
FBXO42ENSG00000037637.6943.68860574.460300.7160012.5237011.66210HepG2SRFBP1
FBXO42ENSG00000037637.6456.40710617.65540-0.436503.753603.22430HepG2SRSF1
FBXO42ENSG00000037637.6518.38080624.47250-0.268601.867801.33980HepG2SRSF5
FBXO42ENSG00000037637.6548.38980710.21310-0.373103.696002.99510HepG2SUCLG1
FBXO42ENSG00000037637.6345.59340518.49890-0.585303.201401.76930HepG2SUGP2
FBXO42ENSG00000037637.6278.54180442.16890-0.666703.215702.49300HepG2SUPV3L1
FBXO42ENSG00000037637.6309.69750463.35690-0.581304.637204.02440HepG2TIAL1
FBXO42ENSG00000037637.6400.01950502.80540-0.329901.951301.43010HepG2UTP3
FBXO42ENSG00000037637.6464.41960337.161200.461903.750602.98840HepG2ZC3H8
FBXO42ENSG00000037637.61413.675401939.74050-0.456406.709805.20410K562ATP5C1
FBXO42ENSG00000037637.61238.20940868.745300.511203.714102.49870K562EIF3D
FBXO42ENSG00000037637.61167.00120905.748900.365502.967502.11920K562EIF4A3
FBXO42ENSG00000037637.61195.07140810.968000.559305.871104.60470K562FIP1L1
FBXO42ENSG00000037637.6726.62720941.94270-0.374403.624902.94690K562FXR1
FBXO42ENSG00000037637.61154.24090898.042800.362003.774402.45040K562GLRX3
FBXO42ENSG00000037637.61030.28360786.664400.389103.252102.61280K562HNRNPC
FBXO42ENSG00000037637.6351.42110667.06560-0.924608.737706.91700K562HNRNPM
FBXO42ENSG00000037637.61603.682201099.454400.544505.886104.73930K562HSPD1
FBXO42ENSG00000037637.61297.17260955.175900.441402.939601.87320K562IGF2BP2
FBXO42ENSG00000037637.61233.17110971.483200.344002.725201.54490K562IGF2BP3
FBXO42ENSG00000037637.61190.82850920.656400.371102.259101.51910K562PPIG
FBXO42ENSG00000037637.61488.030701896.21660-0.349702.912102.07530K562PUF60
FBXO42ENSG00000037637.61407.587801833.39530-0.381302.813902.26720K562PUS1
FBXO42ENSG00000037637.6587.06570777.49690-0.405303.041301.90650K562SAFB
FBXO42ENSG00000037637.61287.659201035.186300.314803.308702.42050K562SF3A3
FBXO42ENSG00000037637.6764.67010956.01060-0.322202.391401.72590K562SRSF1
FBXO42ENSG00000037637.6684.88660875.22750-0.353802.870202.03420K562SYNCRIP
FBXO42ENSG00000037637.61591.017001303.155600.287803.200201.82880K562TROVE2
FBXO42ENSG00000037637.61160.17660989.761700.229102.267701.49480K562WDR43
FBXO42ENSG00000037637.61967.074001616.521300.283102.254301.48790K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FBXO42 is not available on ENCORE database.





6 RBPs can affect the splicing of FBXO42 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFBXO42ENSG00000037637.6chr1-165874951658766116583100165832541662127716621412-0.074000.000300.09381excludedK562KHSRP
SEFBXO42ENSG00000037637.6chr1-1658749516587661165831001658325416621277166214120.093000.000380.03212includedHepG2TIAL1
SEFBXO42ENSG00000037637.6chr1-165874951658766116583100165832541662127716621412-0.073000.001980.07495excludedK562HNRNPK
MXEFBXO42ENSG00000037637.6chr1-1663229716632414166416631664193016621277166214121667874916678949-0.293000.000000.000002includedK562HNRNPC
MXEFBXO42ENSG00000037637.6chr1-16632297166324141664166316641930166212771662141216678749166789490.179000.001270.058481includedK562TIA1
MXEFBXO42ENSG00000037637.6chr1-16632297166324141664166316641930166212771662141216678749166789490.148000.008060.094731includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FBXO42 is not avaliable on ENCORE database.