FAM96A

General Information

Gene Name       : FAM96A
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM96A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM96A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM96A RNA is bound by 17 proteins.  







eCLIP assay for FAM96A is not avaliable on ENCORE database.





17 proteins are bound to FAM96A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr156436767464367751-3'-UTR,CDS,intron-Distal,intron-Proximal3.216856.20918K562BUD13
chr156436478964364870-3'-UTR,intron-Distal3.104803.70380HepG2LARP4
chr156436765964367754-3'-UTR,CDS,intron-Distal,intron-Proximal4.112416.42898K562AQR
chr156436477664364856-3'-UTR,intron-Distal,intron-Proximal4.218723.97054K562IGF2BP1
chr156436479564364866-3'-UTR,intron-Distal3.869823.54514K562TIA1
chr156436496464365073-3'-UTR,intron-Distal3.220783.40279K562NOLC1
chr156436493664365013-3'-UTR,intron-Distal3.576913.27682HepG2LARP4
chr156438088564380966-5'-UTR,CDS,intron-Distal,intron-Proximal4.1461447.09326K562PABPC4
chr156438587364385984-5'-UTR,CDS,intron-Distal4.275114.97391HepG2RPS3
chr156438101164381048-5'-UTR,CDS,intron-Distal3.599803.73423K562UCHL5
chr156438586564386017-5'-UTR,CDS,intron-Distal,intron-Proximal4.6315022.66486HepG2DDX3X
chr156438589064386013-5'-UTR,CDS,intron-Distal,intron-Proximal3.2803713.15382K562UCHL5
chr156438587764386005-5'-UTR,CDS,intron-Distal,intron-Proximal3.246696.38429K562DROSHA
chr156438088564381009-5'-UTR,CDS,intron-Distal,intron-Proximal3.4716410.92329HepG2BCLAF1
chr156438090164380963-5'-UTR,CDS,intron-Distal3.019064.85789HepG2SUB1
chr156438594264386071-5'-UTR,CDS,intron-Distal,intron-Proximal3.141823.85118K562EIF3G
chr156438586364385956-CDS,intron-Distal4.7402220.35055K562DDX3X
chr156438590364385955-CDS,intron-Distal3.641714.66021K562GEMIN5
chr156438314664383219-intron-Distal4.793324.90095K562PTBP1
chr156438076264380879-intron-Distal,intron-Proximal4.648105.41654K562KHSRP
chr156438315864383225-intron-Distal3.529844.56984HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM96A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM96A is not available on ENCORE database.

  • 90 RBPs can affect the levels of FAM96A.  








The Knockdown/knockout RNA-Seq assay for FAM96A is not available on ENCORE database.





90 RBPs can affect the gene expression of FAM96A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM96AENSG00000166797.61019.82280724.312600.493503.494702.43990HepG2ABCF1
FAM96AENSG00000166797.6664.59900832.26640-0.324603.171402.52690HepG2ACO1
FAM96AENSG00000166797.6999.86540836.231300.257702.254201.55450HepG2AKAP8L
FAM96AENSG00000166797.61954.541501164.870800.746609.392608.00500HepG2ASCC1
FAM96AENSG00000166797.61047.298801285.31620-0.295503.097702.37750HepG2AUH
FAM96AENSG00000166797.6369.23440525.16300-0.508203.077802.45020HepG2BOP1
FAM96AENSG00000166797.6695.30270832.15120-0.259202.307301.69100HepG2CKAP4
FAM96AENSG00000166797.6991.939701178.09710-0.248102.622701.89780HepG2DAZAP1
FAM96AENSG00000166797.6937.21760769.757400.283902.895102.04370HepG2DDX19B
FAM96AENSG00000166797.6758.666901113.66710-0.553804.608103.85330HepG2EIF2S1
FAM96AENSG00000166797.6759.564701198.31040-0.657804.695603.81360HepG2EIF4B
FAM96AENSG00000166797.61500.605101113.371700.430502.850402.02370HepG2EIF4G2
FAM96AENSG00000166797.6454.81280739.77470-0.701804.909903.87850HepG2FUBP3
FAM96AENSG00000166797.6947.482401241.79920-0.390302.735102.04780HepG2FXR1
FAM96AENSG00000166797.6917.688401222.95140-0.414303.060302.12360HepG2G3BP2
FAM96AENSG00000166797.6355.22910482.60250-0.442102.301601.49180HepG2GEMIN5
FAM96AENSG00000166797.6882.643801166.49750-0.402303.071302.33690HepG2HNRNPK
FAM96AENSG00000166797.6365.60660521.62240-0.512702.909702.26660HepG2HNRNPLL
FAM96AENSG00000166797.6807.66100603.835500.419503.985403.26880HepG2HNRNPU
FAM96AENSG00000166797.6886.116201170.88830-0.402002.800402.12190HepG2IGF2BP2
FAM96AENSG00000166797.6418.20280616.41890-0.559702.982301.60150HepG2ILF3
FAM96AENSG00000166797.6869.435501177.73520-0.437902.473401.53470HepG2KHSRP
FAM96AENSG00000166797.6591.18620760.83670-0.364003.848502.64890HepG2KIF1C
FAM96AENSG00000166797.6854.67170659.139800.374702.627501.44840HepG2LIN28B
FAM96AENSG00000166797.6911.668301278.59250-0.488003.708702.97980HepG2NCBP2
FAM96AENSG00000166797.6523.067801138.63250-1.1222015.9305014.25560HepG2PABPC4
FAM96AENSG00000166797.6913.437501086.95990-0.250902.146701.60070HepG2PCBP1
FAM96AENSG00000166797.6846.246401106.02270-0.386204.320703.67000HepG2PTBP1
FAM96AENSG00000166797.6785.634101115.14590-0.505305.121704.34140HepG2PUF60
FAM96AENSG00000166797.6882.629801197.84920-0.440604.915704.11870HepG2QKI
FAM96AENSG00000166797.6355.36570711.18350-1.000906.445605.39470HepG2RAVER1
FAM96AENSG00000166797.6758.636901233.42230-0.7012012.0662011.14130HepG2RBM22
FAM96AENSG00000166797.6753.294001087.12540-0.529205.693104.75770HepG2RBM25
FAM96AENSG00000166797.6961.28900756.914400.344702.250401.36490HepG2RBM27
FAM96AENSG00000166797.6934.870801146.41360-0.294302.904902.27470HepG2RECQL
FAM96AENSG00000166797.61024.47550705.065700.539005.176304.27980HepG2RPLP0
FAM96AENSG00000166797.6367.82030527.41370-0.519903.761603.05550HepG2RPS19
FAM96AENSG00000166797.6944.71430698.085900.436403.261102.39210HepG2RPS2
FAM96AENSG00000166797.6910.98250635.014700.520503.129902.28050HepG2RPS3A
FAM96AENSG00000166797.61111.89990712.583200.641806.633704.97770HepG2RPS5
FAM96AENSG00000166797.6732.36710537.728700.445603.600802.88320HepG2SAFB2
FAM96AENSG00000166797.6370.97830516.33010-0.477002.411501.75100HepG2SF3B1
FAM96AENSG00000166797.6850.49360574.498100.565902.377201.65500HepG2SNRNP70
FAM96AENSG00000166797.61136.776301393.10650-0.293403.405902.86740HepG2SRFBP1
FAM96AENSG00000166797.6850.810701201.92930-0.498407.273806.59170HepG2SRSF1
FAM96AENSG00000166797.6680.99150977.83370-0.522007.770306.92980HepG2SRSF9
FAM96AENSG00000166797.61674.791001209.548700.469408.449107.64830HepG2SSB
FAM96AENSG00000166797.61010.92760707.102400.515603.734402.96550HepG2SUPV3L1
FAM96AENSG00000166797.6824.943801080.34150-0.389104.110503.44820HepG2TAF15
FAM96AENSG00000166797.6805.16410992.68600-0.302102.294701.53160HepG2TIA1
FAM96AENSG00000166797.6823.11850586.653200.488502.326001.85940HepG2TIAL1
FAM96AENSG00000166797.6712.40910591.989500.267002.078701.57690HepG2TRIM56
FAM96AENSG00000166797.6819.83370625.743700.389702.486101.88870HepG2U2AF1
FAM96AENSG00000166797.6511.63530622.78690-0.283601.857801.34590HepG2UTP3
FAM96AENSG00000166797.61821.160401416.576600.362305.013304.28750K562AGGF1
FAM96AENSG00000166797.62066.555401473.986300.487405.431404.49860K562AKAP8L
FAM96AENSG00000166797.62486.129503430.78540-0.464605.172404.41320K562AQR
FAM96AENSG00000166797.6689.315501077.85180-0.644905.683904.42010K562BOP1
FAM96AENSG00000166797.6495.12500689.79770-0.478403.623302.38040K562CCAR1
FAM96AENSG00000166797.61294.715601940.85230-0.584102.440601.45310K562CNOT7
FAM96AENSG00000166797.6828.767601146.10340-0.467703.705002.79910K562CPSF6
FAM96AENSG00000166797.61803.429502304.32790-0.353605.455504.58570K562DDX47
FAM96AENSG00000166797.61954.597001586.277200.301103.319202.34970K562DKC1
FAM96AENSG00000166797.6989.101901368.65030-0.468602.859001.55760K562EEF2
FAM96AENSG00000166797.61226.202201491.86770-0.282903.028401.75240K562EIF2S1
FAM96AENSG00000166797.61708.091902382.52090-0.480102.422501.74150K562EIF2S2
FAM96AENSG00000166797.6408.00080701.64890-0.782203.688102.50870K562EIF3A
FAM96AENSG00000166797.6975.196701277.87370-0.390004.383902.87370K562EIF4B
FAM96AENSG00000166797.6636.261001166.06020-0.874007.106605.70460K562FMR1
FAM96AENSG00000166797.61323.812601644.46700-0.312903.392302.12900K562GLRX3
FAM96AENSG00000166797.6792.388901094.27670-0.465704.203303.23020K562GPKOW
FAM96AENSG00000166797.61679.868402127.54690-0.340802.670101.61710K562HNRNPA1
FAM96AENSG00000166797.6791.969501407.62080-0.8297013.4695012.23620K562HNRNPC
FAM96AENSG00000166797.61374.610501787.36820-0.378803.533402.14720K562IGF2BP3
FAM96AENSG00000166797.6599.72910934.29700-0.639604.473903.25290K562KRR1
FAM96AENSG00000166797.62204.010001752.464100.330603.252302.25260K562MBNL1
FAM96AENSG00000166797.61439.010101728.93600-0.264803.202102.33240K562MTPAP
FAM96AENSG00000166797.61712.932101228.342400.479703.140502.19060K562NAA15
FAM96AENSG00000166797.61475.353701921.04010-0.380807.990406.81410K562NSUN2
FAM96AENSG00000166797.6943.297101356.35410-0.523904.421203.37130K562PCBP3
FAM96AENSG00000166797.61087.866001374.22720-0.337102.829101.38850K562PHF6
FAM96AENSG00000166797.62246.168201647.921500.446704.423303.35210K562PPIG
FAM96AENSG00000166797.64873.876904129.638600.239002.254901.30220K562PUM1
FAM96AENSG00000166797.62361.835101461.975300.691908.915807.98860K562PUS1
FAM96AENSG00000166797.61913.352401424.321100.425705.607904.78920K562RBM15
FAM96AENSG00000166797.6879.666201151.38500-0.388303.628002.49350K562RCC2
FAM96AENSG00000166797.6888.188801310.90580-0.561604.307503.28460K562RPS19
FAM96AENSG00000166797.61633.011201895.52140-0.215102.188501.45620K562SF3A3
FAM96AENSG00000166797.6740.457501040.58650-0.490903.511002.41240K562SF3B1
FAM96AENSG00000166797.61213.916101815.62790-0.580803.744101.69040K562SMN1
FAM96AENSG00000166797.6676.937901091.49080-0.689205.916304.25520K562SRFBP1
FAM96AENSG00000166797.61616.663401941.99760-0.264503.737002.66840K562SRPK2
FAM96AENSG00000166797.6718.489101346.87410-0.9066010.725107.83020K562TBRG4
FAM96AENSG00000166797.6736.678501213.90290-0.720507.663106.03680K562TIAL1
FAM96AENSG00000166797.6837.051401289.52190-0.623407.124905.45300K562TRIM56
FAM96AENSG00000166797.61491.420602036.91660-0.449708.434807.26240K562UPF1
FAM96AENSG00000166797.61230.033401742.93000-0.502806.398305.03400K562WDR3
FAM96AENSG00000166797.61527.232001812.41220-0.247003.198602.29450K562WDR43
FAM96AENSG00000166797.63141.035903865.14990-0.299302.829501.95500K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM96A is not available on ENCORE database.





20 RBPs can affect the splicing of FAM96A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM96AENSG00000166797.6chr15-6437330064373350643676036436773664380885643810500.259000.000000.00000includedK562SRSF1
SEFAM96AENSG00000166797.6chr15-643733006437335064367690643677366438088564381050-0.355000.000000.00000excludedK562SF3B4
SEFAM96AENSG00000166797.6chr15-6437330064373350643676036436773664380885643810500.128000.000180.04882includedK562PCBP1
SEFAM96AENSG00000166797.6chr15-643733006437335064367690643677366438088564381050-0.246000.000000.00001excludedHepG2HNRNPK
SEFAM96AENSG00000166797.6chr15-643733006437335064367603643677806438088564381050-0.135000.000000.00000excludedK562AQR
SEFAM96AENSG00000166797.6chr15-643733006437335064367690643677366438088564381050-0.168000.000140.01336excludedHepG2NCBP2
SEFAM96AENSG00000166797.6chr15-6437330064373350643676906436773664380885643810500.242000.000310.01868includedHepG2SFPQ
SEFAM96AENSG00000166797.6chr15-643733006437335064367690643677366438088564381050-0.155000.001030.05221excludedK562EFTUD2
SEFAM96AENSG00000166797.6chr15-643733006437335064367690643677366438088564381050-0.224000.000010.00025excludedK562U2AF1
SEFAM96AENSG00000166797.6chr15-643733006437335064367690643677366438088564381050-0.168000.000820.05675excludedK562HNRNPUL1
SEFAM96AENSG00000166797.6chr15-6437330064373350643676906436773664380885643810500.322000.000000.00100includedHepG2RBFOX2
SEFAM96AENSG00000166797.6chr15-6437330064373350643676906436773664380885643810500.217000.000860.08010includedK562CPSF6
SEFAM96AENSG00000166797.6chr15-643733006437335064367603643677366438088564381050-0.180000.000000.00057excludedK562HNRNPK
A3SSFAM96AENSG00000166797.6chr15-6436755164367780643675516436773664380885643810500.191000.000000.00000longerK562AQR
MXEFAM96AENSG00000166797.6chr15-64367690643677366438088564381050643647576436522764385843643862170.091000.001140.037681includedK562PTBP1
MXEFAM96AENSG00000166797.6chr15-6436769064367736643808856438105064364757643652276438584364386217-0.074000.004660.052432includedK562DROSHA
MXEFAM96AENSG00000166797.6chr15-64367690643677366437330064373350643647576436522764380885643810500.081000.000170.004551includedK562SRSF1
MXEFAM96AENSG00000166797.6chr15-64367690643677366438088564381050643647576436522764385843643862170.100000.000510.011411includedK562SRSF1
MXEFAM96AENSG00000166797.6chr15-6436769064367736643808856438105064364776643652276438584364386007-0.114000.000160.011852includedK562SF3B1
MXEFAM96AENSG00000166797.6chr15-64367690643677366438088564381050643647576436522764385843643862170.091000.001230.031481includedK562TARDBP
MXEFAM96AENSG00000166797.6chr15-64367690643677366437330064373350643651796436522764380885643810500.093000.004060.025631includedHepG2U2AF2
MXEFAM96AENSG00000166797.6chr15-64367690643677366438088564381050643647576436522764385843643862170.115000.001770.089011includedK562TRA2A
MXEFAM96AENSG00000166797.6chr15-6436769064367736643733006437335064365179643652276438088564381050-0.103000.000030.001442includedHepG2HNRNPK
MXEFAM96AENSG00000166797.6chr15-64367690643677366438088564381050643647576436522764385843643862170.106000.000210.014391includedK562IGF2BP2
MXEFAM96AENSG00000166797.6chr15-6436769064367736643733006437335064365179643652276438088564381050-0.071000.000010.000282includedK562SF3B4
MXEFAM96AENSG00000166797.6chr15-6436769064367736643733006437335064365179643652276438088564381050-0.081000.001400.065842includedHepG2DDX6

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM96A is not avaliable on ENCORE database.