FAM208B

General Information

Gene Name : FAM208B
Gene ID : ENSG00000108021.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FAM208B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FAM208B	ENSG00000108021.20	32.86	23.75	28.30	ENCSR000AEF
HepG2	FAM208B	ENSG00000108021.20	18.14	28.49	23.31	ENCSR985KAT
K562	FAM208B	ENSG00000108021.20	35.58	35.17	35.38	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FAM208B is not avaliable on ENCORE database.

Proteins bound to RNA

FAM208B RNA is bound by 44 proteins.

CanvasJS.com

eCLIP assay for FAM208B is not avaliable on ENCORE database.

44 proteins are bound to FAM208B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	5762301	5762333	+	intron-Distal	5.85463	50.36555	HepG2	QKI
chr10	5750633	5750671	+	intron-Distal	6.25188	46.25217	K562	PTBP1
chr10	5750671	5750710	+	intron-Distal	6.84412	45.53244	K562	PTBP1
chr10	5762333	5762348	+	intron-Distal	6.08595	43.49876	HepG2	QKI
chr10	5750618	5750701	+	intron-Distal	5.37809	43.00976	HepG2	PTBP1
chr10	5762348	5762365	+	intron-Distal	6.42965	42.03171	HepG2	QKI
chr10	5742745	5742827	+	intron-Distal	6.14982	37.03831	K562	EXOSC5
chr10	5726908	5727020	+	5'-UTR	4.90061	36.20206	HepG2	DDX3X
chr10	5762257	5762301	+	intron-Distal	5.14139	28.64233	HepG2	QKI
chr10	5762304	5762386	+	intron-Distal	6.25801	25.41265	K562	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 198 entries

eCLIP assay for FAM208B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FAM208B is not available on ENCORE database.
114 RBPs can affect the levels of FAM208B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FAM208B is not available on ENCORE database.

114 RBPs can affect the gene expression of FAM208B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FAM208B	ENSG00000108021.15	3669.67040	1681.63910	1.12570	47.47430	45.14900	K562	FXR1
FAM208B	ENSG00000108021.15	2609.65900	1316.20500	0.98740	41.21660	39.58490	HepG2	SRSF9
FAM208B	ENSG00000108021.15	2927.96060	1617.83830	0.85570	31.70420	30.48520	HepG2	SRSF1
FAM208B	ENSG00000108021.15	3120.00450	1719.94320	0.85910	21.76930	19.48430	K562	U2AF2
FAM208B	ENSG00000108021.15	2410.92810	1463.08620	0.72050	20.76160	19.34890	HepG2	PCBP1
FAM208B	ENSG00000108021.15	1206.43590	1997.52930	-0.72750	20.18760	18.66210	HepG2	HNRNPU
FAM208B	ENSG00000108021.15	1706.85410	3281.71500	-0.94310	19.63210	17.17970	K562	FIP1L1
FAM208B	ENSG00000108021.15	1479.77450	2322.41360	-0.65020	16.91240	15.63220	K562	AGGF1
FAM208B	ENSG00000108021.15	1131.90760	1778.88080	-0.65220	16.83720	15.44480	HepG2	SAFB2
FAM208B	ENSG00000108021.15	4708.57510	2228.61760	1.07900	18.16500	15.36650	K562	EIF3D
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 130 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FAM208B is not available on ENCORE database.

20 RBPs can affect the splicing of FAM208B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	FAM208B	ENSG00000108021.15	chr10	+	5754356	5754502			5751492	5751626	5754785	5754835	-0.61500	0.00000	0.00001	excluded	HepG2	U2AF2
SE	FAM208B	ENSG00000108021.15	chr10	+	5777266	5777509			5772449	5773166	5781580	5782460	-0.28900	0.00000	0.00009	excluded	HepG2	SF3A3
SE	FAM208B	ENSG00000108021.15	chr10	+	5777266	5777509			5772449	5773166	5781580	5782460	-0.37200	0.00000	0.00000	excluded	K562	HNRNPU
SE	FAM208B	ENSG00000108021.15	chr10	+	5777266	5777509			5772449	5773166	5781580	5782460	-0.38600	0.00000	0.00002	excluded	K562	HNRNPC
RI	FAM208B	ENSG00000108021.15	chr10	+	5804494	5805703			5804494	5804609	5804991	5805703	0.18100	0.00000	0.00000	included	K562	AQR
MXE	FAM208B	ENSG00000108021.15	chr10	+	5756097	5756170	5762222	5762360	5754785	5754881	5762506	5762631	-0.43900	0.00000	0.00179	2included	HepG2	TRA2A
RI	FAM208B	ENSG00000108021.15	chr10	+	5762528	5762737			5762528	5762631	5762717	5762737	0.15100	0.00003	0.00084	included	K562	UTP18
SE	FAM208B	ENSG00000108021.15	chr10	+	5762222	5762360			5756097	5756170	5762506	5762631	-0.38400	0.00006	0.01722	excluded	K562	DROSHA
SE	FAM208B	ENSG00000108021.15	chr10	+	5759621	5759713			5754785	5754881	5762506	5762574	-0.44800	0.00007	0.00343	excluded	HepG2	SF3A3
SE	FAM208B	ENSG00000108021.15	chr10	+	5762222	5762360			5759621	5759713	5762506	5762631	0.32200	0.00009	0.07064	included	HepG2	TRA2A

Showing 1 to 10 of 42 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FAM208B

General Information

Functions

Localization

Domains (AlphaFold: FAM208B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FAM208B is not avaliable on ENCORE database.

44 proteins are bound to FAM208B RNA:

eCLIP assay for FAM208B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FAM208B is not available on ENCORE database.

114 RBPs can affect the gene expression of FAM208B :

The Knockdown/knockout RNA-Seq assay for FAM208B is not available on ENCORE database.

20 RBPs can affect the splicing of FAM208B :

The Knockdown/knockout RNA-Seq assay for FAM208B is not avaliable on ENCORE database.