DNAJC1

General Information

Gene Name : DNAJC1
Gene ID : ENSG00000136770.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: DNAJC1)

Not Available

Antibody Validation

Bethyl Labs: A304-055A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DNAJC1	ENSG00000136770.10	14.56	13.77	14.16	ENCSR000AEF
HepG2	DNAJC1	ENSG00000136770.10	8.33	10.56	9.45	ENCSR985KAT
K562	DNAJC1	ENSG00000136770.10	38.19	26.68	32.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
DNAJC1		A304-055A	1				BGHcLV39-27, Submitted, ENCORE2	BGKcLV38-19, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
DNAJC1	K562	CRISPR			DNAJC1-BGKcLV38-19,DNAJC1-BGKcLV38-20	NT-BGKcLV38-1,NT-BGKcLV38-2	63.5,65.4	Submitting	ENCORE2
DNAJC1	HepG2	CRISPR			DNAJC1-BGHcLV39-27,DNAJC1-BGHcLV39-28	NT-BGHcLV39-1,NT-BGHcLV39-2	62.3,70.6	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
DNAJC1	Product_ID: A304-055A Lot_ID: 1 Source: Bethyl Labs Target Name: DNAJC1-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DNAJC1 is not avaliable on ENCORE database.

Proteins bound to RNA

DNAJC1 RNA is bound by 13 proteins.

CanvasJS.com

eCLIP assay for DNAJC1 is not avaliable on ENCORE database.

13 proteins are bound to DNAJC1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr10	22092448	22092622	-	intron-Distal	3.99112	12.70998	K562	HNRNPL
chr10	22208761	22208831	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.68194	11.26582	K562	ZNF622
chr10	22092453	22092642	-	intron-Distal	3.47715	11.14072	K562	AGGF1
chr10	22076256	22076314	-	intron-Distal	5.51705	8.93487	K562	PTBP1
chr10	22292557	22292643	-	5'-UTR,intron-Distal,intron-Proximal	4.89272	8.17272	HepG2	DDX3X
chr10	22207757	22207800	-	CDS,intron-Distal	3.78911	8.04012	K562	ZNF622
chr10	22226486	22226601	-	intron-Distal	3.81214	8.04002	K562	KHSRP
chr10	22175329	22175392	-	intron-Distal	4.16798	7.91405	K562	EXOSC5
chr10	22199723	22199785	-	intron-Distal	5.43114	7.72823	K562	PTBP1
chr10	22175061	22175108	-	intron-Distal	4.23381	7.61465	K562	EXOSC5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 38 entries

eCLIP assay for DNAJC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DNAJC1 is not available on ENCORE database.
84 RBPs can affect the levels of DNAJC1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for DNAJC1 is not available on ENCORE database.

84 RBPs can affect the gene expression of DNAJC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DNAJC1	ENSG00000136770.6	125.95510	403.47610	-1.67960	22.55140	21.01600	HepG2	QKI
DNAJC1	ENSG00000136770.6	596.89820	1345.30810	-1.17240	19.32360	17.94150	K562	AQR
DNAJC1	ENSG00000136770.6	627.53770	281.92440	1.15430	15.48370	13.74120	HepG2	MSI2
DNAJC1	ENSG00000136770.6	1536.37980	964.60710	0.67140	13.21960	11.82980	K562	EIF2S2
DNAJC1	ENSG00000136770.6	425.72530	235.97690	0.85120	9.62410	8.67050	HepG2	TRIM56
DNAJC1	ENSG00000136770.6	540.00880	280.11100	0.94690	9.67890	8.64660	HepG2	BOP1
DNAJC1	ENSG00000136770.6	701.25640	1023.37800	-0.54530	9.26310	8.00580	K562	NSUN2
DNAJC1	ENSG00000136770.6	635.92240	271.54100	1.22760	8.83700	7.62290	HepG2	RAVER1
DNAJC1	ENSG00000136770.6	546.03720	335.67720	0.70180	7.97150	6.98730	HepG2	CELF1
DNAJC1	ENSG00000136770.6	568.63060	372.51220	0.61010	7.37240	6.59090	HepG2	ZNF622
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 95 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DNAJC1 is not available on ENCORE database.

7 RBPs can affect the splicing of DNAJC1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	DNAJC1	ENSG00000136770.6	chr10	-	22217434	22217481			22209726	22209892	22217968	22218070	0.11100	0.00000	0.00010	included	K562	HNRNPU
SE	DNAJC1	ENSG00000136770.6	chr10	-	22168672	22168812			22094908	22095028	22171210	22171368	0.10100	0.00000	0.00000	included	K562	HNRNPC
A3SS	DNAJC1	ENSG00000136770.6	chr10	-	22055189	22055351			22055189	22055238	22094908	22095028	0.08700	0.00000	0.00000	longer	K562	AQR
MXE	DNAJC1	ENSG00000136770.6	chr10	-	22055189	22055238	22094985	22095028	22048437	22048547	22171210	22171368	-0.13700	0.00033	0.02137	2included	K562	TIA1
SE	DNAJC1	ENSG00000136770.6	chr10	-	22217434	22217481			22208831	22208858	22217968	22218070	-0.16000	0.00048	0.02283	excluded	K562	SF3B1
MXE	DNAJC1	ENSG00000136770.6	chr10	-	22171210	22171363	22193450	22193541	22094908	22095028	22207707	22207801	-0.11100	0.00214	0.03054	2included	K562	DROSHA
MXE	DNAJC1	ENSG00000136770.6	chr10	-	22171210	22171363	22193450	22193541	22094908	22095028	22207707	22207801	-0.10700	0.00491	0.06211	2included	K562	HNRNPUL1
MXE	DNAJC1	ENSG00000136770.6	chr10	-	22094908	22095028	22171210	22171368	22055189	22055238	22193450	22193541	-0.10100	0.00787	0.07409	2included	K562	DROSHA
MXE	DNAJC1	ENSG00000136770.6	chr10	-	22094908	22095028	22171210	22171368	22055189	22055238	22193450	22193541	-0.10300	0.00982	0.09567	2included	K562	HNRNPUL1

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DNAJC1

General Information

Functions

Localization

Domains (AlphaFold: DNAJC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DNAJC1 is not avaliable on ENCORE database.

13 proteins are bound to DNAJC1 RNA:

eCLIP assay for DNAJC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DNAJC1 is not available on ENCORE database.

84 RBPs can affect the gene expression of DNAJC1 :

The Knockdown/knockout RNA-Seq assay for DNAJC1 is not available on ENCORE database.

7 RBPs can affect the splicing of DNAJC1 :

The Knockdown/knockout RNA-Seq assay for DNAJC1 is not avaliable on ENCORE database.