DDX23

General Information

Gene Name : DDX23
Gene ID : ENSG00000174243.9
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: DDX23)

Not Available

Antibody Validation

Bethyl Labs: A300-695A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DDX23	ENSG00000174243.9	70.45	72.93	71.69	ENCSR000AEF
HepG2	DDX23	ENSG00000174243.9	74.83	69.21	72.02	ENCSR985KAT
K562	DDX23	ENSG00000174243.9	78.37	92.56	85.47	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	DDX23-BGKcLV28-K562	ENCSR507WAD	DDX23	K562	Released		ENCSR220DTX	CRISPR	KD% = 64.0,57.0

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
DDX23	ENCAB902ODT	A300-695A	1			Released, ENCODE4	BGHcLV34-23, Submitted, ENCORE2	BGKcLV28-73, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
DDX23	K562	CRISPR	ENCSR507WAD	ENCSR220DTX	DDX23-BGKcLV28-73,DDX23-BGKcLV28-74	NT-BGKcLV28-1,NT-BGKcLV28-2	64.0,57.0	Released	ENCODE4
DDX23	HepG2	CRISPR			BGHcLV29-73,BGHcLV29-74	BGHcLV29-1,BGHcLV29-2	no clear band,	NotSatisfied	ENCODE4
DDX23	HepG2	CRISPR			DDX23-BGHcLV34-23,DDX23-BGHcLV34-24	NT-BGHcLV34-1,NT-BGHcLV34-2	51.7,49.6	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
DDX23	Product_ID: A300-695A Lot_ID: 1 Source: Bethyl Labs Target Name: DDX23-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DDX23 is not avaliable on ENCORE database.

Proteins bound to RNA

DDX23 RNA is bound by 19 proteins.

eCLIP assay for DDX23 is not avaliable on ENCORE database.

19 proteins are bound to DDX23 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	49233648	49233693	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.24921	7.55049	K562	GRWD1
chr12	49231697	49231736	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.81638	5.73400	HepG2	PPIG
chr12	49230695	49230739	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.56439	6.14048	K562	ZNF622
chr12	49231671	49231735	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.83816	5.74979	HepG2	GRWD1
chr12	49233625	49233657	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.96308	7.65528	K562	ZNF622
chr12	49229886	49229905	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.20636	6.83960	K562	AQR
chr12	49233626	49233644	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.27463	3.34184	HepG2	GRWD1
chr12	49231846	49231858	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.30532	3.61259	K562	ZNF622
chr12	49233795	49233854	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.20232	13.95379	K562	UCHL5
chr12	49230361	49230409	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.21353	8.82687	K562	UCHL5
chr12	49227171	49227258	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.78096	3.11282	HepG2	G3BP1
chr12	49230413	49230482	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.36165	6.67248	K562	ZNF800
chr12	49233644	49233692	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.22812	8.78094	HepG2	GRWD1
chr12	49233795	49233824	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.40738	4.45558	HepG2	GRWD1
chr12	49223961	49224006	-	3'-UTR,CDS,intron-Distal	4.89325	5.42508	HepG2	RBM15
chr12	49233631	49233693	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.24935	6.25515	K562	ZNF800
chr12	49230451	49230510	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.49596	7.72651	K562	PUM1
chr12	49228232	49228263	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.97395	6.46803	K562	UCHL5
chr12	49229860	49229913	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.36677	4.83899	HepG2	PRPF8
chr12	49230558	49230579	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.78248	4.00952	K562	ZNF800
chr12	49233624	49233690	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.13479	6.24896	HepG2	PPIG
chr12	49233795	49233872	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.28034	7.70981	K562	GRWD1
chr12	49233862	49233889	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.03134	3.25529	K562	PUM1
chr12	49233677	49233693	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.02990	12.55418	K562	UCHL5
chr12	49224221	49224264	-	3'-UTR,CDS,intron-Distal	4.72107	4.48994	K562	RBM15
chr12	49233650	49233677	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.42145	17.13945	K562	UCHL5
chr12	49233854	49233883	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.15371	8.43384	K562	UCHL5
chr12	49231829	49231898	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.65475	5.04653	K562	SF3B4
chr12	49230455	49230507	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32624	4.41784	HepG2	GRWD1
chr12	49233626	49233650	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.81747	11.46466	K562	UCHL5
chr12	49231721	49231734	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.29062	5.07480	K562	PUM1
chr12	49230691	49230756	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.21028	3.68893	HepG2	GRWD1
chr12	49231700	49231749	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.70900	10.28502	K562	ZNF622
chr12	49231722	49231764	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.08987	9.87150	K562	UCHL5
chr12	49228160	49228192	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.88240	3.45225	K562	GRWD1
chr12	49226292	49226331	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.01593	3.49332	HepG2	PPIG
chr12	49223875	49224028	-	3'-UTR,CDS,intron-Distal	4.23053	3.45012	HepG2	UPF1
chr12	49223948	49224006	-	3'-UTR,CDS,intron-Distal	4.93524	12.12312	K562	RBM15
chr12	49228161	49228244	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.23799	3.47879	HepG2	PPIG
chr12	49230759	49230815	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54251	7.50303	K562	UCHL5
chr12	49231802	49231864	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.61847	10.27359	K562	UCHL5
chr12	49233626	49233631	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.51220	3.00939	K562	ZNF800
chr12	49233868	49233890	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.12768	3.39477	K562	BUD13
chr12	49233657	49233692	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.27290	9.23212	K562	ZNF622
chr12	49233574	49233632	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.90111	6.80869	K562	AQR
chr12	49224111	49224202	-	3'-UTR,CDS,intron-Distal	4.16315	6.37184	K562	RBM15
chr12	49245865	49245909	-	5'-UTR,intron-Distal	3.83307	11.07607	K562	UCHL5
chr12	49224433	49224470	-	CDS,intron-Distal	3.99134	3.06595	HepG2	BCLAF1
chr12	49231331	49231435	-	CDS,intron-Distal	3.05047	3.67092	HepG2	G3BP1
chr12	49231133	49231171	-	CDS,intron-Distal,intron-Proximal	3.74125	5.10924	K562	ZNF800
chr12	49231311	49231375	-	CDS,intron-Distal,intron-Proximal	4.47952	13.82032	K562	GRWD1
chr12	49239360	49239432	-	CDS,intron-Distal	3.67851	8.10680	HepG2	GRWD1
chr12	49239511	49239565	-	CDS,intron-Distal	3.23437	4.50748	HepG2	GRWD1
chr12	49231335	49231432	-	CDS,intron-Distal	4.45778	7.82199	HepG2	BCLAF1
chr12	49239358	49239427	-	CDS,intron-Distal	3.10758	11.26001	K562	UCHL5
chr12	49231067	49231106	-	CDS,intron-Distal,intron-Proximal	4.64791	8.58706	K562	UCHL5
chr12	49231061	49231150	-	CDS,intron-Distal,intron-Proximal	3.67773	9.28015	HepG2	GRWD1
chr12	49231396	49231445	-	CDS,intron-Distal,intron-Proximal	3.83423	4.66686	K562	DDX24
chr12	49231160	49231174	-	CDS,intron-Distal,intron-Proximal	4.55353	3.61005	K562	PUM1
chr12	49224420	49224475	-	CDS,intron-Distal	4.02564	3.89948	K562	YBX3
chr12	49237727	49237734	-	CDS,intron-Distal	4.61736	5.14565	K562	UCHL5
chr12	49231308	49231440	-	CDS,intron-Distal,intron-Proximal	6.09171	52.32078	K562	UCHL5
chr12	49231375	49231443	-	CDS,intron-Distal,intron-Proximal	3.04338	10.13244	K562	GRWD1
chr12	49225815	49225863	-	CDS,intron-Distal,intron-Proximal	5.06086	5.69951	K562	AQR
chr12	49231324	49231369	-	CDS,intron-Distal	3.44234	5.62898	K562	PUM1
chr12	49231341	49231396	-	CDS,intron-Distal	3.20980	4.70526	K562	DDX24
chr12	49237632	49237742	-	CDS,intron-Distal,intron-Proximal	4.40371	7.64759	K562	PRPF8
chr12	49239516	49239566	-	CDS,intron-Distal,intron-Proximal	4.03477	12.44554	K562	UCHL5
chr12	49224278	49224406	-	CDS,intron-Distal	3.43477	5.10442	K562	YBX3
chr12	49231306	49231436	-	CDS,intron-Distal,intron-Proximal	5.03109	4.86986	HepG2	FXR2
chr12	49231400	49231486	-	CDS,intron-Distal,intron-Proximal	3.12852	6.43602	K562	SF3B4
chr12	49231325	49231391	-	CDS,intron-Distal	3.76299	6.81726	HepG2	GRWD1
chr12	49231152	49231173	-	CDS,intron-Distal,intron-Proximal	5.21832	8.77129	K562	UCHL5
chr12	49237740	49237775	-	CDS,intron-Distal	3.60883	6.77066	K562	UCHL5
chr12	49231319	49231449	-	CDS,intron-Distal,intron-Proximal	5.11939	32.64675	K562	ZNF622
chr12	49231389	49231442	-	CDS,intron-Distal,intron-Proximal	3.21182	7.07280	K562	PUM1
chr12	49231391	49231458	-	CDS,intron-Distal,intron-Proximal	3.23724	4.79429	HepG2	GRWD1
chr12	49231306	49231324	-	CDS,intron-Distal,intron-Proximal	3.62766	4.66091	K562	PUM1
chr12	49225131	49225305	-	intron-Distal,intron-Proximal	3.83540	3.68462	HepG2	MATR3
chr12	49231652	49231715	-	intron-Distal,intron-Proximal	3.57655	9.36208	K562	UCHL5
chr12	49225135	49225292	-	intron-Distal,intron-Proximal	4.83196	14.74934	K562	PTBP1
chr12	49229860	49229886	-	intron-Distal,intron-Proximal	4.23482	6.77156	K562	AQR
chr12	49227000	49227049	-	intron-Distal,intron-Proximal	4.00107	3.52230	K562	AQR
chr12	49244372	49244473	-	intron-Distal	3.81708	4.69074	K562	PTBP1
chr12	49227049	49227060	-	intron-Distal,intron-Proximal	3.74759	3.52230	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for DDX23 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DDX23 is not available on ENCORE database.
81 RBPs can affect the levels of DDX23.

The Knockdown/knockout RNA-Seq assay for DDX23 is not available on ENCORE database.

81 RBPs can affect the gene expression of DDX23 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DDX23	ENSG00000174243.5	2836.01490	2040.19750	0.47510	3.79770	3.18850	HepG2	AKAP1
DDX23	ENSG00000174243.5	1664.53310	2531.38130	-0.60480	5.09900	3.75580	HepG2	CCAR1
DDX23	ENSG00000174243.5	2574.45780	1865.11080	0.46490	11.96420	10.77790	HepG2	CKAP4
DDX23	ENSG00000174243.5	1065.90620	1869.33570	-0.81040	11.93720	10.62230	HepG2	CPSF6
DDX23	ENSG00000174243.5	1033.60500	1495.63160	-0.53310	5.23990	3.68590	HepG2	DDX1
DDX23	ENSG00000174243.5	1336.26250	1783.70740	-0.41670	2.82430	2.04360	HepG2	DDX55
DDX23	ENSG00000174243.5	1050.82360	1466.50820	-0.48090	5.24840	4.30830	HepG2	DNAJC21
DDX23	ENSG00000174243.5	2296.92580	1783.33240	0.36500	2.43990	1.83790	HepG2	EIF4A3
DDX23	ENSG00000174243.5	1960.75910	2514.25500	-0.35870	2.90240	2.06960	HepG2	EIF4G2
DDX23	ENSG00000174243.5	2269.03330	1822.94430	0.31570	3.00210	2.13480	HepG2	EWSR1
DDX23	ENSG00000174243.5	2401.70990	1799.65900	0.41620	3.51820	2.74390	HepG2	FXR1
DDX23	ENSG00000174243.5	2086.65670	1669.26280	0.32190	2.08710	1.50570	HepG2	G3BP1
DDX23	ENSG00000174243.5	1307.35880	1781.04000	-0.44610	7.78220	6.24670	HepG2	HDGF
DDX23	ENSG00000174243.5	1867.35370	2444.91470	-0.38880	4.62010	3.46360	HepG2	HNRNPA2B1
DDX23	ENSG00000174243.5	1058.99050	1646.91800	-0.63710	7.59180	6.48950	HepG2	HNRNPC
DDX23	ENSG00000174243.5	2086.14670	2459.29330	-0.23740	2.55390	1.86420	HepG2	HNRNPF
DDX23	ENSG00000174243.5	2343.26150	1690.71130	0.47080	4.92390	4.01310	HepG2	HNRNPK
DDX23	ENSG00000174243.5	1240.70040	2022.23300	-0.70480	8.99540	7.93160	HepG2	HNRNPLL
DDX23	ENSG00000174243.5	2018.46030	2421.72300	-0.26280	2.18830	1.54010	HepG2	IGF2BP1
DDX23	ENSG00000174243.5	1319.98430	1705.32080	-0.36950	6.56070	5.02670	HepG2	KIF1C
DDX23	ENSG00000174243.5	2356.18800	1800.28880	0.38810	3.02950	2.34330	HepG2	MAGOH
DDX23	ENSG00000174243.5	1120.77990	1649.91850	-0.55790	5.22670	4.24530	HepG2	PABPC4
DDX23	ENSG00000174243.5	1983.31280	1694.20440	0.22720	2.57010	1.97950	HepG2	PCBP1
DDX23	ENSG00000174243.5	2518.36460	1788.79940	0.49340	3.04960	1.96010	HepG2	PCBP2
DDX23	ENSG00000174243.5	2358.50810	1806.93030	0.38420	6.54040	5.40730	HepG2	PRPF4
DDX23	ENSG00000174243.5	1037.37700	1376.00820	-0.40750	2.91320	2.08480	HepG2	PRPF8
DDX23	ENSG00000174243.5	2058.92540	2518.09710	-0.29040	1.93630	1.42470	HepG2	PUF60
DDX23	ENSG00000174243.5	1888.25480	2249.46470	-0.25250	2.21130	1.43460	HepG2	RBM15
DDX23	ENSG00000174243.5	1354.19630	1694.45810	-0.32340	2.88550	2.19940	HepG2	RBM25
DDX23	ENSG00000174243.5	2254.30140	1918.56160	0.23260	2.67940	2.14510	HepG2	NELFE
DDX23	ENSG00000174243.5	2171.31690	2648.94450	-0.28680	2.19900	1.58060	HepG2	RPLP0
DDX23	ENSG00000174243.5	2392.13890	1794.79740	0.41440	7.52620	6.62930	HepG2	SF3B4
DDX23	ENSG00000174243.5	2034.71870	2414.77310	-0.24710	2.19220	1.55560	HepG2	SLBP
DDX23	ENSG00000174243.5	3220.54270	2863.22810	0.16960	2.05220	1.60080	HepG2	SRFBP1
DDX23	ENSG00000174243.5	2322.77000	1873.40130	0.31010	4.72760	4.15150	HepG2	SRSF1
DDX23	ENSG00000174243.5	1571.89110	2416.10130	-0.62020	8.17540	7.08530	HepG2	SRSF7
DDX23	ENSG00000174243.5	1671.08420	2485.99450	-0.57300	14.44520	13.45870	HepG2	SSB
DDX23	ENSG00000174243.5	1126.58820	1613.04360	-0.51780	3.03210	1.76950	HepG2	SUB1
DDX23	ENSG00000174243.5	1346.16640	1775.65960	-0.39950	2.74940	2.07440	HepG2	SUPV3L1
DDX23	ENSG00000174243.5	1458.30390	1971.06230	-0.43470	4.24200	3.36870	HepG2	TARDBP
DDX23	ENSG00000174243.5	2467.97630	1975.90260	0.32070	2.52860	1.92570	HepG2	U2AF1
DDX23	ENSG00000174243.5	1584.86270	2050.09760	-0.37130	6.22650	5.38670	HepG2	UTP3
DDX23	ENSG00000174243.5	1119.15210	1783.16130	-0.67200	18.19280	16.73670	HepG2	ZC3H8
DDX23	ENSG00000174243.5	1605.03980	2335.37520	-0.54100	15.86820	14.82840	HepG2	ZNF622
DDX23	ENSG00000174243.5	6677.22960	4946.62550	0.43270	5.45270	4.67740	K562	AQR
DDX23	ENSG00000174243.5	2507.91100	3104.00180	-0.30760	4.86850	3.57640	K562	BCLAF1
DDX23	ENSG00000174243.5	2600.27390	3262.29180	-0.32720	3.75260	2.35100	K562	CCDC124
DDX23	ENSG00000174243.5	2369.23850	3265.72670	-0.46300	6.58310	5.36940	K562	CPSF6
DDX23	ENSG00000174243.5	6406.27900	7913.36270	-0.30480	3.75360	2.61150	K562	CELF1
DDX23	ENSG00000174243.5	3524.90670	4079.83810	-0.21090	2.75110	1.54190	K562	DDX21
DDX23	ENSG00000174243.5	3528.65040	3056.59290	0.20710	2.33320	1.53860	K562	DKC1
DDX23	ENSG00000174243.5	4717.98600	2905.09880	0.69950	11.03130	9.08050	K562	EFTUD2
DDX23	ENSG00000174243.5	2605.99760	1985.78100	0.39200	5.66000	4.53680	K562	EIF3G
DDX23	ENSG00000174243.5	2628.66520	2189.22210	0.26380	2.09210	1.37310	K562	EIF4A3
DDX23	ENSG00000174243.5	3261.31760	4500.07490	-0.46450	3.56630	1.68030	K562	ESF1
DDX23	ENSG00000174243.5	1533.36610	2124.44760	-0.47040	5.85720	3.43050	K562	FASTKD2
DDX23	ENSG00000174243.5	1943.89750	2537.13610	-0.38420	3.03790	1.84470	K562	FKBP4
DDX23	ENSG00000174243.5	2569.30500	3322.77190	-0.37100	3.66430	2.67630	K562	FMR1
DDX23	ENSG00000174243.5	2098.64000	2816.33700	-0.42440	3.89230	2.79280	K562	FTO
DDX23	ENSG00000174243.5	1335.56470	1755.58760	-0.39450	4.28940	2.57650	K562	FUS
DDX23	ENSG00000174243.5	3627.67660	2276.69720	0.67200	18.65320	17.19170	K562	FXR1
DDX23	ENSG00000174243.5	981.70330	1790.87260	-0.86730	7.12640	5.87840	K562	G3BP2
DDX23	ENSG00000174243.5	3166.63830	3761.62320	-0.24840	2.92750	1.75400	K562	GLRX3
DDX23	ENSG00000174243.5	3586.93710	6299.82910	-0.81260	19.39630	17.30480	K562	GRSF1
DDX23	ENSG00000174243.5	3008.61750	3646.68510	-0.27750	2.75800	1.68700	K562	HNRNPA1
DDX23	ENSG00000174243.5	1146.95880	2924.18520	-1.35020	18.57780	17.10880	K562	HNRNPC
DDX23	ENSG00000174243.5	4232.81910	5738.33980	-0.43900	5.20270	4.12740	K562	HSPD1
DDX23	ENSG00000174243.5	1610.80300	2662.33340	-0.72490	7.13810	5.56330	K562	KRR1
DDX23	ENSG00000174243.5	3728.85300	2639.98970	0.49810	7.14000	5.76090	K562	MAGOH
DDX23	ENSG00000174243.5	4321.36230	3376.98700	0.35560	4.31700	3.13360	K562	MBNL1
DDX23	ENSG00000174243.5	2433.36340	3043.48840	-0.32280	3.19440	2.24950	K562	METAP2
DDX23	ENSG00000174243.5	5417.20400	6860.76290	-0.34080	3.18000	1.96570	K562	MSI2
DDX23	ENSG00000174243.5	3179.22140	3954.83600	-0.31490	6.05970	4.89990	K562	MTPAP
DDX23	ENSG00000174243.5	3685.59050	4394.29190	-0.25370	6.32480	5.25840	K562	NSUN2
DDX23	ENSG00000174243.5	4551.09420	2348.75410	0.95420	22.89240	20.04500	K562	PCBP2
DDX23	ENSG00000174243.5	3764.69800	4804.50440	-0.35190	3.34550	2.42780	K562	PPIG
DDX23	ENSG00000174243.5	4759.05240	2826.99880	0.75130	12.64490	11.03010	K562	PRPF8
DDX23	ENSG00000174243.5	6330.99650	7318.97870	-0.20920	2.33080	1.44810	K562	PUM2
DDX23	ENSG00000174243.5	3816.03600	2817.00940	0.43780	4.85900	4.16530	K562	PUS1
DDX23	ENSG00000174243.5	3743.43030	2744.74230	0.44760	7.99350	7.01680	K562	RBM15
DDX23	ENSG00000174243.5	3108.56560	2458.97190	0.33810	3.12380	2.22560	K562	RBM22
DDX23	ENSG00000174243.5	3619.34130	4335.87520	-0.26060	3.64520	2.71740	K562	SF3A3
DDX23	ENSG00000174243.5	2873.94110	1861.44220	0.62650	11.89960	10.04390	K562	SF3B4
DDX23	ENSG00000174243.5	3566.11310	2514.65800	0.50390	7.81500	6.63380	K562	SRSF1
DDX23	ENSG00000174243.5	3101.81010	3641.04680	-0.23120	2.99240	1.77290	K562	SRSF7
DDX23	ENSG00000174243.5	1670.78450	2048.36030	-0.29390	3.40720	1.96450	K562	SSB
DDX23	ENSG00000174243.5	3924.25370	5079.26850	-0.37220	3.31110	1.91120	K562	STAU1
DDX23	ENSG00000174243.5	4446.85140	3366.26970	0.40150	5.24720	4.10700	K562	SYNCRIP
DDX23	ENSG00000174243.5	3519.47380	2544.75560	0.46770	5.07830	4.10430	K562	TARDBP
DDX23	ENSG00000174243.5	3816.71090	4951.45270	-0.37550	3.74410	2.06690	K562	TRIP6
DDX23	ENSG00000174243.5	4410.23280	5372.79420	-0.28480	5.32120	3.55320	K562	TROVE2
DDX23	ENSG00000174243.5	2192.58280	2896.83980	-0.40180	3.68270	2.49170	K562	UCHL5
DDX23	ENSG00000174243.5	3026.90860	3986.87490	-0.39740	5.09990	3.89470	K562	WDR3
DDX23	ENSG00000174243.5	2315.85260	2949.92290	-0.34910	2.88340	1.64550	K562	XRN2
DDX23	ENSG00000174243.5	4114.03480	5572.73630	-0.43780	5.61220	4.31110	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DDX23 is not available on ENCORE database.

10 RBPs can affect the splicing of DDX23 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	DDX23	ENSG00000174243.5	chr12	-	49231306	49231440			49231063	49231176	49231724	49231863	-0.05300	0.00000	0.00000	excluded	K562	AQR
SE	DDX23	ENSG00000174243.5	chr12	-	49228902	49228997			49228102	49228280	49229903	49230049	0.07500	0.00004	0.00125	included	K562	HNRNPC
A3SS	DDX23	ENSG00000174243.5	chr12	-	49233795	49233934			49233795	49233889	49237722	49237833	0.07600	0.00002	0.00341	longer	HepG2	SF3A3
A3SS	DDX23	ENSG00000174243.5	chr12	-	49233795	49233934			49233795	49233889	49237722	49237833	0.05100	0.00001	0.00240	longer	K562	RBM22
A3SS	DDX23	ENSG00000174243.5	chr12	-	49233795	49233934			49233795	49233889	49237722	49237833	0.06700	0.00000	0.00000	longer	K562	AQR
A3SS	DDX23	ENSG00000174243.5	chr12	-	49230676	49230856			49230676	49230820	49231063	49231440	0.24700	0.00000	0.00000	longer	K562	AQR
A3SS	DDX23	ENSG00000174243.5	chr12	-	49226204	49226447			49226204	49226356	49227059	49227302	0.05200	0.00000	0.00000	longer	K562	AQR
RI	DDX23	ENSG00000174243.5	chr12	-	49231063	49231440			49231063	49231176	49231306	49231440	0.05200	0.00162	0.02012	included	HepG2	SF3A3
RI	DDX23	ENSG00000174243.5	chr12	-	49230351	49230820			49230351	49230577	49230676	49230820	0.08600	0.00002	0.00045	included	HepG2	SF3A3
RI	DDX23	ENSG00000174243.5	chr12	-	49230351	49230820			49230351	49230577	49230676	49230820	0.07200	0.00000	0.00007	included	HepG2	U2AF2
RI	DDX23	ENSG00000174243.5	chr12	-	49231063	49231440			49231063	49231176	49231306	49231440	0.06900	0.00025	0.00483	included	HepG2	PRPF8
RI	DDX23	ENSG00000174243.5	chr12	-	49230351	49230820			49230351	49230577	49230676	49230820	0.08700	0.00044	0.00748	included	HepG2	PRPF8
RI	DDX23	ENSG00000174243.5	chr12	-	49231063	49231440			49231063	49231176	49231306	49231440	0.07600	0.00003	0.00148	included	HepG2	IGF2BP3
RI	DDX23	ENSG00000174243.5	chr12	-	49231063	49231440			49231063	49231176	49231306	49231440	0.06900	0.00002	0.00106	included	HepG2	FTO
RI	DDX23	ENSG00000174243.5	chr12	-	49231063	49231440			49231063	49231176	49231306	49231440	0.06600	0.00000	0.00001	included	HepG2	U2AF1
RI	DDX23	ENSG00000174243.5	chr12	-	49230351	49230820			49230351	49230577	49230676	49230820	0.05500	0.00531	0.04857	included	HepG2	U2AF1
RI	DDX23	ENSG00000174243.5	chr12	-	49231063	49231440			49231063	49231176	49231306	49231440	0.05200	0.00115	0.02502	included	K562	U2AF1
RI	DDX23	ENSG00000174243.5	chr12	-	49231063	49231440			49231063	49231176	49231306	49231440	0.09300	0.00000	0.00003	included	K562	U2AF2
RI	DDX23	ENSG00000174243.5	chr12	-	49231315	49231863			49231315	49231462	49231724	49231863	-0.16900	0.00084	0.04396	excluded	K562	SBDS
RI	DDX23	ENSG00000174243.5	chr12	-	49231063	49231440			49231063	49231176	49231306	49231440	0.09100	0.00000	0.00000	included	K562	AQR
RI	DDX23	ENSG00000174243.5	chr12	-	49230351	49230820			49230351	49230577	49230676	49230820	0.10000	0.00000	0.00000	included	K562	AQR
MXE	DDX23	ENSG00000174243.5	chr12	-	49230984	49231176	49231259	49231440	49230676	49230820	49231724	49231863	-0.06600	0.00000	0.00000	2included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DDX23

General Information

Functions

Localization

Domains (AlphaFold: DDX23)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DDX23 is not avaliable on ENCORE database.

19 proteins are bound to DDX23 RNA:

eCLIP assay for DDX23 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DDX23 is not available on ENCORE database.

81 RBPs can affect the gene expression of DDX23 :

The Knockdown/knockout RNA-Seq assay for DDX23 is not available on ENCORE database.

10 RBPs can affect the splicing of DDX23 :

The Knockdown/knockout RNA-Seq assay for DDX23 is not avaliable on ENCORE database.