CSNK1A1

General Information

Gene Name : CSNK1A1
Gene ID : ENSG00000113712.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CSNK1A1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CSNK1A1	ENSG00000113712.17	79.86	72.85	76.35	ENCSR000AEF
HepG2	CSNK1A1	ENSG00000113712.17	54.04	79.10	66.57	ENCSR985KAT
K562	CSNK1A1	ENSG00000113712.17	96.18	80.45	88.31	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CSNK1A1 is not avaliable on ENCORE database.

Proteins bound to RNA

CSNK1A1 RNA is bound by 34 proteins.

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eCLIP assay for CSNK1A1 is not avaliable on ENCORE database.

34 proteins are bound to CSNK1A1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	148884673	148884699	-	3'-UTR,intron-Distal	6.27166	84.06088	HepG2	QKI
chr5	148884624	148884673	-	3'-UTR,intron-Distal	5.82801	51.22695	HepG2	QKI
chr5	148884701	148884729	-	3'-UTR,intron-Distal	5.39991	50.74060	HepG2	QKI
chr5	148884598	148884757	-	3'-UTR,intron-Distal	5.51527	42.98481	K562	QKI
chr5	148930843	148930925	-	5'-UTR,intron-Distal,intron-Proximal	4.06952	34.10843	HepG2	DDX3X
chr5	148884569	148884624	-	3'-UTR,intron-Distal	6.05256	30.55779	HepG2	QKI
chr5	148875047	148875160	-	3'-UTR,intron-Distal,intron-Proximal	3.70993	29.33267	K562	FAM120A
chr5	148930793	148930843	-	5'-UTR,intron-Distal,intron-Proximal	4.23453	20.14506	HepG2	DDX3X
chr5	148874206	148874304	-	3'-UTR,intron-Distal	5.13759	18.70721	K562	IGF2BP1
chr5	148876340	148876434	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.10375	17.88439	HepG2	U2AF2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 109 entries

eCLIP assay for CSNK1A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CSNK1A1 is not available on ENCORE database.
74 RBPs can affect the levels of CSNK1A1.

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The Knockdown/knockout RNA-Seq assay for CSNK1A1 is not available on ENCORE database.

74 RBPs can affect the gene expression of CSNK1A1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CSNK1A1	ENSG00000113712.12	8039.33480	4768.58390	0.75340	32.58160	30.91840	HepG2	ETF1
CSNK1A1	ENSG00000113712.12	3837.78140	2427.77220	0.66050	29.24710	27.95310	HepG2	ZNF622
CSNK1A1	ENSG00000113712.12	1208.36030	2154.83460	-0.83450	29.15010	27.37260	HepG2	SAFB2
CSNK1A1	ENSG00000113712.12	1683.10610	2558.48630	-0.60420	18.29940	16.59160	HepG2	DDX19B
CSNK1A1	ENSG00000113712.12	2561.71950	3889.32490	-0.60240	17.89960	16.57270	HepG2	PCBP1
CSNK1A1	ENSG00000113712.12	3928.62760	2766.26760	0.50600	15.00570	13.82770	HepG2	ACO1
CSNK1A1	ENSG00000113712.12	2846.17590	4102.29360	-0.52740	14.25910	13.02940	HepG2	RECQL
CSNK1A1	ENSG00000113712.12	1309.03380	2253.43160	-0.78360	12.30660	10.83770	HepG2	NSUN2
CSNK1A1	ENSG00000113712.12	2708.14980	3546.08220	-0.38890	11.89020	10.49170	K562	NSUN2
CSNK1A1	ENSG00000113712.12	5458.73680	3985.62950	0.45370	9.58650	8.75340	HepG2	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 83 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CSNK1A1 is not available on ENCORE database.

16 RBPs can affect the splicing of CSNK1A1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148897356	148897440	148892632	148892772	148899852	148899951	-0.05500	0.00000	excluded	K562	SRSF1
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148897356	148897440	148892632	148892772	148899852	148899951	-0.06700	0.00026	excluded	HepG2	RBM22
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148897356	148897440	148892632	148892772	148899852	148899951	0.07700	0.00205	included	K562	MATR3
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148897356	148897440	148892632	148892772	148899852	148899951	0.07200	0.00000	included	HepG2	HNRNPM
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148895231	148895289	148892632	148892772	148897356	148897440	0.12000	0.00081	included	K562	FMR1
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148884243	148884298	148871759	148876423	148885045	148885158	-0.14900	0.00003	excluded	HepG2	U2AF2
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148880577	148880785	148871759	148876423	148885009	148885188	0.07000	0.00000	included	K562	AQR
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148878676	148878856	148871759	148876423	148880577	148880803	-0.41000	0.00001	excluded	K562	AQR
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148891356	148891435	148889441	148889516	148892632	148892772	-0.14800	0.00000	excluded	K562	AQR
SE	CSNK1A1	ENSG00000113712.12	chr5	-	148897356	148897440	148892632	148892772	148899852	148899951	0.10100	0.00057	included	HepG2	IGF2BP3

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CSNK1A1

General Information

Functions

Localization

Domains (AlphaFold: CSNK1A1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CSNK1A1 is not avaliable on ENCORE database.

34 proteins are bound to CSNK1A1 RNA:

eCLIP assay for CSNK1A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CSNK1A1 is not available on ENCORE database.

74 RBPs can affect the gene expression of CSNK1A1 :

The Knockdown/knockout RNA-Seq assay for CSNK1A1 is not available on ENCORE database.

16 RBPs can affect the splicing of CSNK1A1 :

The Knockdown/knockout RNA-Seq assay for CSNK1A1 is not avaliable on ENCORE database.