CNNM3

General Information

Gene Name : CNNM3
Gene ID : ENSG00000168763.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CNNM3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CNNM3	ENSG00000168763.15	1.14	5.35	3.24	ENCSR000AEF
HepG2	CNNM3	ENSG00000168763.15	35.17	20.76	27.97	ENCSR985KAT
K562	CNNM3	ENSG00000168763.15	8.50	7.87	8.19	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CNNM3 is not avaliable on ENCORE database.

Proteins bound to RNA

CNNM3 RNA is bound by 38 proteins.

CanvasJS.com

eCLIP assay for CNNM3 is not avaliable on ENCORE database.

38 proteins are bound to CNNM3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	97498987	97499081	+	3'-UTR	5.46863	35.87545	HepG2	UPF1
chr2	97498451	97498535	+	3'-UTR	6.90115	34.10504	HepG2	UPF1
chr2	97482361	97482477	+	CDS	4.30447	33.84503	HepG2	DDX3X
chr2	97499187	97499245	+	3'-UTR	5.91719	31.52798	HepG2	LIN28B
chr2	97499245	97499272	+	3'-UTR	6.76662	30.12342	HepG2	LIN28B
chr2	97498865	97499009	+	3'-UTR	4.86607	26.79536	HepG2	AKAP1
chr2	97499009	97499090	+	3'-UTR	4.75513	24.88632	HepG2	AKAP1
chr2	97499123	97499223	+	3'-UTR	3.65255	24.79442	HepG2	UPF1
chr2	97498880	97498987	+	3'-UTR	4.36441	23.74598	HepG2	UPF1
chr2	97498535	97498604	+	3'-UTR	5.41805	22.45442	HepG2	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 99 entries

eCLIP assay for CNNM3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CNNM3 is not available on ENCORE database.
74 RBPs can affect the levels of CNNM3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CNNM3 is not available on ENCORE database.

74 RBPs can affect the gene expression of CNNM3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CNNM3	ENSG00000168763.11	994.86640	1710.37450	-0.78170	20.78840	19.66640	HepG2	SSB
CNNM3	ENSG00000168763.11	973.52310	1744.09450	-0.84120	19.55180	18.43260	HepG2	RBM22
CNNM3	ENSG00000168763.11	798.40520	1362.02450	-0.77060	19.18010	17.89190	HepG2	ACO1
CNNM3	ENSG00000168763.11	1058.57310	2373.61830	-1.16500	18.08620	16.85400	HepG2	AKAP1
CNNM3	ENSG00000168763.11	1010.51180	1966.64300	-0.96060	16.63150	15.07020	HepG2	HNRNPK
CNNM3	ENSG00000168763.11	920.02850	1692.78080	-0.87960	15.11180	14.00660	HepG2	SRSF9
CNNM3	ENSG00000168763.11	1507.58310	850.16750	0.82630	14.73200	13.20050	HepG2	IGF2BP1
CNNM3	ENSG00000168763.11	1171.69660	2130.92480	-0.86290	12.63310	11.63280	HepG2	NELFE
CNNM3	ENSG00000168763.11	1350.74990	1969.90700	-0.54440	11.86890	11.02440	HepG2	SRFBP1
CNNM3	ENSG00000168763.11	1112.80980	610.08950	0.86700	12.01640	10.88740	HepG2	BOP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CNNM3 is not available on ENCORE database.

6 RBPs can affect the splicing of CNNM3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	CNNM3	ENSG00000168763.11	chr2	+	97492569	97492719			97492569	97492646	97493467	97493637	0.12200	0.00002	0.01881	longer	HepG2	LARP4
A5SS	CNNM3	ENSG00000168763.11	chr2	+	97492569	97492719			97492569	97492646	97493467	97494871	-0.11100	0.00004	0.03010	shorter	HepG2	KHSRP
SE	CNNM3	ENSG00000168763.11	chr2	+	97497705	97497805			97494732	97494871	97498288	97498310	0.06100	0.00009	0.00601	included	HepG2	MATR3
SE	CNNM3	ENSG00000168763.11	chr2	+	97492569	97492646			97490794	97490938	97493467	97494871	0.28600	0.00116	0.01599	included	HepG2	U2AF2
MXE	CNNM3	ENSG00000168763.11	chr2	+	97493835	97493932	97494303	97494437	97493467	97493637	97494732	97494871	0.14400	0.00653	0.08557	1included	HepG2	FTO
A3SS	CNNM3	ENSG00000168763.11	chr2	+	97494713	97494871			97494732	97494871	97494302	97494437	0.05300	0.00965	0.05133	longer	K562	AQR

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CNNM3

General Information

Functions

Localization

Domains (AlphaFold: CNNM3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CNNM3 is not avaliable on ENCORE database.

38 proteins are bound to CNNM3 RNA:

eCLIP assay for CNNM3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CNNM3 is not available on ENCORE database.

74 RBPs can affect the gene expression of CNNM3 :

The Knockdown/knockout RNA-Seq assay for CNNM3 is not available on ENCORE database.

6 RBPs can affect the splicing of CNNM3 :

The Knockdown/knockout RNA-Seq assay for CNNM3 is not avaliable on ENCORE database.