CBR4

General Information

Gene Name : CBR4
Gene ID : ENSG00000145439.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CBR4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CBR4	ENSG00000145439.11	19.43	15.79	17.61	ENCSR000AEF
HepG2	CBR4	ENSG00000145439.11	6.36	10.89	8.62	ENCSR985KAT
K562	CBR4	ENSG00000145439.11	11.09	11.15	11.12	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CBR4 is not avaliable on ENCORE database.

Proteins bound to RNA

CBR4 RNA is bound by 16 proteins.

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eCLIP assay for CBR4 is not avaliable on ENCORE database.

16 proteins are bound to CBR4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	169848524	169848654	-	intron-Distal	4.28858	17.55953	HepG2	HNRNPL
chr4	169904506	169904591	-	intron-Distal	5.64684	11.66401	K562	EXOSC5
chr4	169931035	169931099	-	intron-Distal	6.13850	10.48996	K562	AQR
chr4	169931205	169931220	-	CDS,intron-Distal	4.49539	9.59567	HepG2	HNRNPC
chr4	169905503	169905564	-	intron-Distal	5.23673	9.02315	K562	EXOSC5
chr4	169919631	169919689	-	intron-Distal	3.24454	8.80115	HepG2	U2AF2
chr4	169852610	169852733	-	intron-Distal	5.18679	8.33028	HepG2	HNRNPM
chr4	169931167	169931205	-	CDS,intron-Distal	3.93167	8.30313	HepG2	HNRNPC
chr4	169923289	169923368	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.10649	7.88236	HepG2	U2AF2
chr4	169923097	169923178	-	3'-UTR,intron-Distal,intron-Proximal	4.75103	7.66316	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 65 entries

eCLIP assay for CBR4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CBR4 is not available on ENCORE database.
102 RBPs can affect the levels of CBR4.

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The Knockdown/knockout RNA-Seq assay for CBR4 is not available on ENCORE database.

102 RBPs can affect the gene expression of CBR4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CBR4	ENSG00000145439.7	356.19480	1228.52540	-1.78620	39.28220	37.28280	K562	AQR
CBR4	ENSG00000145439.7	309.42480	786.64890	-1.34610	23.17580	20.53760	K562	EIF4A3
CBR4	ENSG00000145439.7	528.66720	1017.63640	-0.94480	21.25470	19.49340	K562	UPF1
CBR4	ENSG00000145439.7	381.49600	818.08040	-1.10060	21.04600	19.48900	K562	FXR1
CBR4	ENSG00000145439.7	1325.49160	674.97350	0.97350	17.94910	16.32920	HepG2	RBM25
CBR4	ENSG00000145439.7	334.86850	991.49720	-1.56600	13.71720	11.95060	K562	CPSF6
CBR4	ENSG00000145439.7	620.74070	959.74320	-0.62870	11.40370	10.03190	K562	NSUN2
CBR4	ENSG00000145439.7	583.42260	947.02760	-0.69890	10.43510	8.92580	K562	SF3A3
CBR4	ENSG00000145439.7	363.21220	618.55920	-0.76810	9.92450	8.90260	HepG2	UTP3
CBR4	ENSG00000145439.7	545.88250	863.78910	-0.66210	10.19720	8.74690	K562	MTPAP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 118 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CBR4 is not available on ENCORE database.

22 RBPs can affect the splicing of CBR4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CBR4	ENSG00000145439.7	chr4	-	169919352	169919436	169908740	169911479	169923221	169923356	-0.10700	0.00000	0.00076	excluded	HepG2	FTO
SE	CBR4	ENSG00000145439.7	chr4	-	169919352	169919436	169908740	169911479	169923221	169923356	-0.07600	0.00000	0.00125	excluded	K562	LARP4
SE	CBR4	ENSG00000145439.7	chr4	-	169919352	169919436	169908740	169911479	169923221	169923356	-0.09400	0.00000	0.00004	excluded	K562	HNRNPUL1
SE	CBR4	ENSG00000145439.7	chr4	-	169919352	169919436	169908740	169911479	169923221	169923356	0.12800	0.00000	0.00050	included	K562	HNRNPU
SE	CBR4	ENSG00000145439.7	chr4	-	169919352	169919436	169908740	169911479	169923221	169923356	0.15100	0.00000	0.00005	included	K562	CPSF6
SE	CBR4	ENSG00000145439.7	chr4	-	169919352	169919436	169908740	169911479	169923221	169923356	0.30600	0.00000	0.00003	included	HepG2	HNRNPU
SE	CBR4	ENSG00000145439.7	chr4	-	169930102	169930205	169928791	169928907	169931098	169931426	-0.17900	0.00001	0.00206	excluded	HepG2	AKAP1
SE	CBR4	ENSG00000145439.7	chr4	-	169919352	169919436	169908740	169911479	169923221	169923356	0.24300	0.00001	0.00107	included	HepG2	SFPQ
SE	CBR4	ENSG00000145439.7	chr4	-	169919352	169919436	169908740	169911479	169923221	169923356	0.15500	0.00004	0.02668	included	HepG2	DROSHA
SE	CBR4	ENSG00000145439.7	chr4	-	169919352	169919436	169908740	169911479	169923221	169923356	0.22100	0.00006	0.00933	included	HepG2	DDX6

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CBR4

General Information

Functions

Localization

Domains (AlphaFold: CBR4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CBR4 is not avaliable on ENCORE database.

16 proteins are bound to CBR4 RNA:

eCLIP assay for CBR4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CBR4 is not available on ENCORE database.

102 RBPs can affect the gene expression of CBR4 :

The Knockdown/knockout RNA-Seq assay for CBR4 is not available on ENCORE database.

22 RBPs can affect the splicing of CBR4 :

The Knockdown/knockout RNA-Seq assay for CBR4 is not avaliable on ENCORE database.