ALDH16A1

General Information

Gene Name : ALDH16A1
Gene ID : ENSG00000161618.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ALDH16A1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ALDH16A1	ENSG00000161618.9	0.27	1.14	0.70	ENCSR000AEF
HepG2	ALDH16A1	ENSG00000161618.9	23.36	1.29	12.32	ENCSR985KAT
K562	ALDH16A1	ENSG00000161618.9	6.41	1.46	3.94	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ALDH16A1 is not avaliable on ENCORE database.

Proteins bound to RNA

ALDH16A1 RNA is bound by 15 proteins.

CanvasJS.com

eCLIP assay for ALDH16A1 is not avaliable on ENCORE database.

15 proteins are bound to ALDH16A1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	49964946	49965022	+	5'-UTR,CDS	4.70435	13.84372	K562	AKAP8L
chr19	49964529	49964582	+	intron-Distal	4.23427	13.53855	K562	AKAP8L
chr19	49964941	49965022	+	5'-UTR,CDS	4.82949	13.14151	K562	EWSR1
chr19	49964156	49964250	+	intron-Proximal	4.07387	12.15962	HepG2	CSTF2T
chr19	49964174	49964273	+	intron-Distal,intron-Proximal	4.71453	11.71046	K562	EWSR1
chr19	49964169	49964274	+	intron-Distal,intron-Proximal	4.34369	10.65745	K562	GTF2F1
chr19	49964169	49964250	+	intron-Proximal	5.73645	10.53672	K562	FAM120A
chr19	49965871	49966005	+	3'-UTR,CDS	4.21285	9.86479	HepG2	PPIG
chr19	49964943	49965027	+	5'-UTR,CDS	4.63514	9.51301	K562	GTF2F1
chr19	49965049	49965132	+	5'-UTR,CDS,intron-Proximal	5.37247	9.49287	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 62 entries

eCLIP assay for ALDH16A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ALDH16A1 is not available on ENCORE database.
85 RBPs can affect the levels of ALDH16A1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ALDH16A1 is not available on ENCORE database.

85 RBPs can affect the gene expression of ALDH16A1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ALDH16A1	ENSG00000161618.5	209.96230	650.95060	-1.63240	29.84540	28.65470	HepG2	SRFBP1
ALDH16A1	ENSG00000161618.5	553.93560	162.29350	1.77100	27.67890	24.96940	K562	TARDBP
ALDH16A1	ENSG00000161618.5	972.46850	481.14210	1.01510	18.32000	16.70460	K562	EIF2S2
ALDH16A1	ENSG00000161618.5	101.23680	312.29110	-1.62520	17.52040	15.60430	K562	POLR2G
ALDH16A1	ENSG00000161618.5	409.51960	156.55440	1.38720	16.89370	14.72960	K562	TIA1
ALDH16A1	ENSG00000161618.5	457.25000	214.91430	1.08910	15.04710	13.78590	HepG2	SUCLG1
ALDH16A1	ENSG00000161618.5	414.51470	203.17340	1.02860	13.51520	12.41250	HepG2	PUM1
ALDH16A1	ENSG00000161618.5	151.29740	407.14570	-1.42820	14.16760	12.31770	K562	PCBP3
ALDH16A1	ENSG00000161618.5	197.78680	453.30000	-1.19650	14.41860	11.76890	K562	NCBP2
ALDH16A1	ENSG00000161618.5	560.35970	246.38470	1.18530	12.37740	11.02710	HepG2	MAGOH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 96 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ALDH16A1 is not available on ENCORE database.

8 RBPs can affect the splicing of ALDH16A1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	ALDH16A1	ENSG00000161618.5	chr19	+	49964875	49965293			49964875	49965057	49965140	49965293	0.31800	0.00000	0.00002	included	K562	AQR
SE	ALDH16A1	ENSG00000161618.5	chr19	+	49967383	49967520			49967110	49967206	49967673	49967779	-0.19400	0.00008	0.00148	excluded	K562	AQR
A5SS	ALDH16A1	ENSG00000161618.5	chr19	+	49972120	49972341			49972120	49972243	49973562	49973844	0.23100	0.00011	0.00280	longer	K562	AQR
MXE	ALDH16A1	ENSG00000161618.5	chr19	+	49964875	49965057	49965140	49965293	49964078	49964156	49965826	49966012	-0.27400	0.00025	0.00271	2included	K562	AQR
MXE	ALDH16A1	ENSG00000161618.5	chr19	+	49964875	49965057	49965144	49965293	49964041	49964156	49965826	49966012	-0.27200	0.00031	0.00325	2included	K562	AQR
RI	ALDH16A1	ENSG00000161618.5	chr19	+	49964875	49965293			49964875	49965057	49965140	49965293	0.64400	0.00039	0.01155	included	HepG2	SRSF1
RI	ALDH16A1	ENSG00000161618.5	chr19	+	49964875	49965293			49964875	49965057	49965140	49965293	0.19500	0.00041	0.00611	included	HepG2	RBM22
MXE	ALDH16A1	ENSG00000161618.5	chr19	+	49964875	49965057	49965140	49965293	49964078	49964156	49965826	49966012	-0.36500	0.00083	0.03213	2included	HepG2	SF3A3
RI	ALDH16A1	ENSG00000161618.5	chr19	+	49964875	49965293			49964875	49965057	49965140	49965293	0.49700	0.00264	0.02666	included	HepG2	U2AF1
MXE	ALDH16A1	ENSG00000161618.5	chr19	+	49964875	49965057	49965140	49965293	49964078	49964156	49965826	49966012	0.25800	0.00354	0.06912	1included	K562	SBDS

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ALDH16A1

General Information

Functions

Localization

Domains (AlphaFold: ALDH16A1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ALDH16A1 is not avaliable on ENCORE database.

15 proteins are bound to ALDH16A1 RNA:

eCLIP assay for ALDH16A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ALDH16A1 is not available on ENCORE database.

85 RBPs can affect the gene expression of ALDH16A1 :

The Knockdown/knockout RNA-Seq assay for ALDH16A1 is not available on ENCORE database.

8 RBPs can affect the splicing of ALDH16A1 :

The Knockdown/knockout RNA-Seq assay for ALDH16A1 is not avaliable on ENCORE database.