TSSK3

General Information

Gene Name       : TSSK3
Gene ID             : ENSG00000162526.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TSSK3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TSSK3ENSG00000162526.60.580.330.45ENCSR000AEF
HepG2TSSK3ENSG00000162526.60.370.860.61ENCSR985KAT
K562TSSK3ENSG00000162526.62.311.101.71ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TSSK3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TSSK3 RNA is bound by 4 proteins.  







eCLIP assay for TSSK3 is not avaliable on ENCORE database.





4 proteins are bound to TSSK3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13281891232818985+intron-Distal,intron-Proximal4.199374.07948K562RBFOX2
chr13282207532822113+intron-Distal4.243305.16181K562PTBP1
chr13282138632821501+intron-Distal3.570303.59395HepG2PTBP1
chr13282232532822439+intron-Distal5.8267014.03089HepG2PTBP1
chr13282003132820123+intron-Distal4.259094.83379HepG2HNRNPK
chr13281945032819532+intron-Distal4.117033.45817K562MATR3
chr13281947132819517+intron-Distal4.600603.42734K562PTBP1
chr13282240932822445+intron-Distal4.8883916.10077K562PTBP1
chr13282238932822409+intron-Distal5.7804821.16675K562PTBP1
chr13281942132819516+intron-Distal3.118496.20894HepG2PTBP1
chr13282233732822389+intron-Distal5.999769.95676K562PTBP1
chr13282194732821989+intron-Distal4.519576.85458K562PTBP1
chr13282269932822736+intron-Distal3.786383.30744K562PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TSSK3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TSSK3 is not available on ENCORE database.

  • 13 RBPs can affect the levels of TSSK3.  








The Knockdown/knockout RNA-Seq assay for TSSK3 is not available on ENCORE database.





13 RBPs can affect the gene expression of TSSK3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TSSK3ENSG00000162526.640.9003010.841801.915403.683801.35870HepG2EXOSC5
TSSK3ENSG00000162526.633.2940013.793401.271201.974101.31270HepG2PRPF4
TSSK3ENSG00000162526.613.7097050.10740-1.869804.120703.45280K562AGGF1
TSSK3ENSG00000162526.619.9882052.13800-1.383203.036002.35100K562AKAP8L
TSSK3ENSG00000162526.625.9959054.70340-1.073302.390901.54630K562ATP5C1
TSSK3ENSG00000162526.621.8549046.53480-1.090402.092101.51260K562DDX47
TSSK3ENSG00000162526.624.9566056.11050-1.168802.663301.80800K562DKC1
TSSK3ENSG00000162526.620.5118055.33500-1.431703.201102.30830K562KIF1C
TSSK3ENSG00000162526.625.0318061.98870-1.308203.150002.16880K562MBNL1
TSSK3ENSG00000162526.615.2700043.44920-1.508602.387301.58130K562NAA15
TSSK3ENSG00000162526.678.5079035.838701.131202.860802.01370K562PCBP3
TSSK3ENSG00000162526.66.9332051.71380-2.899006.482305.69150K562PUS1
TSSK3ENSG00000162526.611.8647050.38130-2.086204.874404.10770K562RBM15
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TSSK3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TSSK3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TSSK3 is not avaliable on ENCORE database.