TRIM39-RPP21

General Information

Gene Name : TRIM39-RPP21
Gene ID : ENSG00000248167.7
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRIM39-RPP21)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRIM39-RPP21	ENSG00000248167.7	0.00	0.06	0.03	ENCSR000AEF
HepG2	TRIM39-RPP21	ENSG00000248167.7	0.31	0.06	0.18	ENCSR985KAT
K562	TRIM39-RPP21	ENSG00000248167.7	0.11	0.22	0.17	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRIM39-RPP21 is not avaliable on ENCORE database.

Proteins bound to RNA

TRIM39-RPP21 RNA is bound by 11 proteins.

eCLIP assay for TRIM39-RPP21 is not avaliable on ENCORE database.

11 proteins are bound to TRIM39-RPP21 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	30314489	30314607	+	3'-UTR,CDS,intron-Proximal	5.40070	10.28790	HepG2	LARP4
chr6	30314514	30314616	+	3'-UTR,CDS	3.90742	9.96973	K562	PABPC4
chr6	30313074	30313078	+	CDS,intron-Proximal	3.46318	4.91258	K562	YBX3
chr6	30303589	30303736	+	CDS	4.43744	5.64460	HepG2	GRWD1
chr6	30313135	30313171	+	CDS,intron-Distal,intron-Proximal	3.72690	8.28216	K562	DDX3X
chr6	30313080	30313135	+	CDS,intron-Distal,intron-Proximal	4.18596	24.47255	K562	DDX3X
chr6	30313157	30313224	+	CDS,intron-Distal,intron-Proximal	3.13394	6.87008	HepG2	PRPF8
chr6	30313253	30313300	+	CDS,intron-Distal,intron-Proximal	3.36984	3.34848	HepG2	PPIG
chr6	30314499	30314536	+	CDS	3.38260	4.94406	K562	YBX3
chr6	30308254	30308292	+	CDS,intron-Proximal	4.22905	3.63072	HepG2	AQR
chr6	30313132	30313141	+	CDS,intron-Distal	3.29312	6.20049	K562	YBX3
chr6	30313298	30313350	+	CDS,intron-Distal	3.23428	5.74118	K562	YBX3
chr6	30314197	30314266	+	CDS,intron-Proximal	3.15349	4.05798	K562	U2AF2
chr6	30303720	30303792	+	CDS,intron-Proximal	5.61765	6.35567	HepG2	PRPF8
chr6	30313231	30313279	+	CDS,intron-Distal,intron-Proximal	3.23267	6.41344	HepG2	PRPF8
chr6	30314283	30314326	+	CDS	3.14961	10.46994	K562	YBX3
chr6	30314238	30314274	+	CDS	4.88260	8.30668	K562	YBX3
chr6	30314195	30314243	+	CDS,intron-Proximal	3.04060	3.41438	K562	BUD13
chr6	30313148	30313165	+	CDS,intron-Distal	4.14744	3.49332	HepG2	PPIG
chr6	30313199	30313288	+	CDS,intron-Distal,intron-Proximal	3.97225	4.86518	HepG2	BUD13
chr6	30313073	30313080	+	CDS,intron-Proximal	3.93973	10.26816	K562	DDX3X
chr6	30307711	30307872	+	intron-Distal,intron-Proximal	4.72183	9.04436	K562	AQR
chr6	30303080	30303150	+	intron-Distal	3.80812	5.93532	K562	PTBP1
chr6	30303077	30303146	+	intron-Distal	4.50730	5.41368	HepG2	PTBP1
chr6	30312943	30312990	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.17734	10.05151	K562	DDX3X
chr6	30307726	30307831	+	intron-Distal,intron-Proximal	4.61872	4.92499	HepG2	AQR
chr6	30312990	30313005	+	CDS,intron-Proximal	4.04289	11.03951	K562	DDX3X
chr6	30312978	30313045	+	CDS,intron-Proximal	4.63210	9.76577	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for TRIM39-RPP21 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRIM39-RPP21 is not available on ENCORE database.
3 RBPs can affect the levels of TRIM39-RPP21.

The Knockdown/knockout RNA-Seq assay for TRIM39-RPP21 is not available on ENCORE database.

3 RBPs can affect the gene expression of TRIM39-RPP21 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRIM39-RPP21	ENSG00000248167.3	0.00000	6.56760	-99999.99999	1.96780	1.37170	HepG2	AUH
TRIM39-RPP21	ENSG00000248167.3	0.00000	7.54360	-99999.99999	2.39010	1.82380	HepG2	ETF1
TRIM39-RPP21	ENSG00000248167.3	0.00000	7.11940	-99999.99999	2.17430	1.71320	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRIM39-RPP21 is not available on ENCORE database.

9 RBPs can affect the splicing of TRIM39-RPP21 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30313267	30313350	30313074	30313175	30314208	30314341	-0.17700	0.00000	0.00000	excluded	HepG2	U2AF1
SE	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30313267	30313350	30313074	30313175	30314208	30314334	-0.20100	0.00000	0.00003	excluded	HepG2	U2AF2
SE	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30308048	30308138	30307532	30307707	30308281	30308397	-0.39400	0.00255	0.02686	excluded	K562	AQR
SE	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30308048	30308138	30307684	30307707	30308281	30308397	-0.44300	0.00721	0.09579	excluded	K562	U2AF2
A3SS	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30314208	30314341	30314215	30314341	30313267	30313350	0.05600	0.00026	0.03510	longer	K562	EFTUD2
A3SS	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30309462	30309673	30309488	30309673	30308281	30308397	0.20200	0.00035	0.07831	longer	HepG2	MATR3
A3SS	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30314208	30314341	30314215	30314341	30313267	30313350	0.05900	0.00023	0.05478	longer	K562	SUPV3L1
A3SS	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30313243	30313350	30313267	30313350	30313074	30313175	0.15400	0.00059	0.05367	longer	HepG2	RBM22
A3SS	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30314208	30314341	30314215	30314341	30313267	30313350	-0.06200	0.00016	0.01956	shorter	HepG2	RBM22
A3SS	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30309462	30309673	30309488	30309673	30308281	30308397	0.18900	0.01478	0.07386	longer	K562	AQR
A3SS	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30314185	30314341	30314208	30314341	30313243	30313350	0.05200	0.00000	0.00000	longer	K562	AQR
A3SS	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30314208	30314341	30314215	30314341	30313267	30313350	0.05700	0.00005	0.01132	longer	K562	PRPF8
A3SS	TRIM39-RPP21	ENSG00000248167.3	chr6	+	30314208	30314341	30314215	30314341	30313267	30313350	0.05700	0.00005	0.08469	longer	K562	NONO

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRIM39-RPP21

General Information

Functions

Localization

Domains (AlphaFold: TRIM39-RPP21)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRIM39-RPP21 is not avaliable on ENCORE database.

11 proteins are bound to TRIM39-RPP21 RNA:

eCLIP assay for TRIM39-RPP21 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRIM39-RPP21 is not available on ENCORE database.

3 RBPs can affect the gene expression of TRIM39-RPP21 :

The Knockdown/knockout RNA-Seq assay for TRIM39-RPP21 is not available on ENCORE database.

9 RBPs can affect the splicing of TRIM39-RPP21 :

The Knockdown/knockout RNA-Seq assay for TRIM39-RPP21 is not avaliable on ENCORE database.