SPATA25

General Information

Gene Name       : SPATA25
Gene ID             : ENSG00000149634.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SPATA25)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SPATA25ENSG00000149634.40.390.320.35ENCSR000AEF
HepG2SPATA25ENSG00000149634.43.040.992.02ENCSR985KAT
K562SPATA25ENSG00000149634.40.300.260.28ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SPATA25 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SPATA25 RNA is bound by 2 proteins.  







eCLIP assay for SPATA25 is not avaliable on ENCORE database.





2 proteins are bound to SPATA25 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr204451577644515871-CDS,intron-Distal4.080729.27045HepG2RBM5
chr204451575244515810-CDS,intron-Distal3.580915.23533HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SPATA25 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SPATA25 is not available on ENCORE database.

  • 23 RBPs can affect the levels of SPATA25.  








The Knockdown/knockout RNA-Seq assay for SPATA25 is not available on ENCORE database.





23 RBPs can affect the gene expression of SPATA25 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SPATA25ENSG00000149634.427.8207054.43950-0.968502.131201.58290HepG2ACO1
SPATA25ENSG00000149634.412.2956066.83630-2.442506.734705.94620HepG2AKAP1
SPATA25ENSG00000149634.467.8718033.806101.005402.694401.96100HepG2DAZAP1
SPATA25ENSG00000149634.430.0225064.01710-1.092402.399501.81220HepG2DDX3X
SPATA25ENSG00000149634.427.1718055.00870-1.017501.891901.37170HepG2DDX6
SPATA25ENSG00000149634.4149.9302058.413601.359806.340805.37720HepG2EIF4A3
SPATA25ENSG00000149634.462.4749031.952200.967302.205301.47260HepG2EIF4G2
SPATA25ENSG00000149634.4110.9712059.605800.896602.879702.26830HepG2ETF1
SPATA25ENSG00000149634.443.4530015.129701.522002.734902.09180HepG2HNRNPA1
SPATA25ENSG00000149634.443.6050016.829201.373402.265301.63220HepG2HNRNPC
SPATA25ENSG00000149634.4137.4195058.981801.220105.117304.23370HepG2MAGOH
SPATA25ENSG00000149634.486.6910032.001301.437605.043304.26770HepG2PUF60
SPATA25ENSG00000149634.477.1125011.706402.719609.499208.04730HepG2RPS3A
SPATA25ENSG00000149634.434.3172011.023101.638302.605601.33500HepG2SART3
SPATA25ENSG00000149634.415.6713061.43370-1.970905.718704.72830HepG2SF3A3
SPATA25ENSG00000149634.466.1913030.687601.108903.028502.29890HepG2SLBP
SPATA25ENSG00000149634.421.4508063.70460-1.570404.098503.55060HepG2SRSF1
SPATA25ENSG00000149634.458.8800031.598600.897801.998201.45520HepG2SRSF5
SPATA25ENSG00000149634.4147.6901048.836501.596403.368702.81540HepG2SSB
SPATA25ENSG00000149634.489.9931016.243902.4698010.9042010.02440HepG2TIAL1
SPATA25ENSG00000149634.466.2484031.266601.083202.639101.78710HepG2TUFM
SPATA25ENSG00000149634.477.0021024.823101.633103.700002.86990HepG2XRN2
SPATA25ENSG00000149634.420.8402059.92000-1.523704.371603.72550HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SPATA25 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SPATA25 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SPATA25 is not avaliable on ENCORE database.