SNHG9

General Information

Gene Name       : SNHG9
Gene ID             : ENSG00000255198.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNHG9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNHG9ENSG00000255198.41.7311.746.74ENCSR000AEF
HepG2SNHG9ENSG00000255198.48.591.775.18ENCSR985KAT
K562SNHG9ENSG00000255198.49.959.969.96ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNHG9 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNHG9 RNA is bound by 12 proteins.  







eCLIP assay for SNHG9 is not avaliable on ENCORE database.





12 proteins are bound to SNHG9 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1620152322015266+intron-Distal3.6719512.03412K562SERBP1
chr1620152702015295+intron-Distal5.49973400.00000HepG2NOLC1
chr1620152402015249+intron-Distal5.27036400.00000HepG2DKC1
chr1620152312015236+intron-Distal5.06004400.00000HepG2DKC1
chr1620152552015294+intron-Distal4.3556220.65121K562XRCC6
chr1620152762015308+intron-Distal,intron-Proximal6.14864400.00000HepG2DKC1
chr1620152072015234+intron-Distal,intron-Proximal3.29846400.00000HepG2NOLC1
chr1620151892015296+intron-Distal,intron-Proximal3.270799.20180HepG2WDR43
chr1620152952015300+intron-Distal5.6024769.24895HepG2NOLC1
chr1620152162015272+intron-Distal,intron-Proximal5.16581400.00000K562LARP7
chr1620152272015231+intron-Distal,intron-Proximal4.86330400.00000HepG2DKC1
chr1620152522015291+intron-Distal3.656798.02379K562NOLC1
chr1620152762015292+intron-Distal6.8329193.97709K562SMNDC1
chr1620152402015256+intron-Distal5.1419615.69048K562SMNDC1
chr1620152492015255+intron-Distal6.20950400.00000HepG2DKC1
chr1620152552015276+intron-Distal5.95536400.00000HepG2DKC1
chr1620153042015311+intron-Distal,intron-Proximal4.6982114.83021K562SF3B4
chr1620152612015295+intron-Distal4.1573210.85527HepG2NOL12
chr1620151882015266+intron-Distal,intron-Proximal3.0367528.17206HepG2UTP18
chr1620152522015304+intron-Distal3.7147444.65045K562SF3B4
chr1620152402015245+intron-Distal3.69701400.00000HepG2NOLC1
chr1620152572015312+intron-Distal,intron-Proximal3.491259.30387K562WDR43
chr1620152492015270+intron-Distal4.42847400.00000HepG2NOLC1
chr1620152662015293+intron-Distal3.575209.18713HepG2UTP18
chr1620152562015300+intron-Distal5.7368086.51601K562AATF
chr1620151902015256+intron-Distal,intron-Proximal4.69748400.00000K562AATF
chr1620152562015271+intron-Distal5.6645925.63708K562SMNDC1
chr1620152342015240+intron-Distal3.34053400.00000HepG2NOLC1
chr1620151902015204+intron-Proximal3.82603400.00000HepG2DKC1
chr1620151242015178+intron-Proximal4.291953.86479HepG2PRPF8
chr1620152102015213+intron-Proximal3.96478400.00000HepG2DKC1
chr1620152132015227+intron-Proximal4.48402400.00000HepG2DKC1
chr1620151382015190+intron-Proximal4.127143.85435K562PRPF8
chr1620151782015225+intron-Proximal3.4048724.39431K562SERBP1
chr1620151862015203+intron-Proximal3.00627400.00000HepG2NOLC1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNHG9 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNHG9 is not available on ENCORE database.

  • 14 RBPs can affect the levels of SNHG9.  








The Knockdown/knockout RNA-Seq assay for SNHG9 is not available on ENCORE database.





14 RBPs can affect the gene expression of SNHG9 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNHG9ENSG00000255198.336.554205.296602.786804.026802.81520HepG2RBM27
SNHG9ENSG00000255198.320.441304.662902.132102.627901.88940HepG2UCHL5
SNHG9ENSG00000255198.369.2140030.939601.161502.965202.02070K562EFTUD2
SNHG9ENSG00000255198.374.8765037.554400.995402.588301.99910K562FXR1
SNHG9ENSG00000255198.371.8136019.752701.862104.373803.05460K562PABPN1
SNHG9ENSG00000255198.399.1497029.885101.730102.454701.53640K562PCBP2
SNHG9ENSG00000255198.3130.8204030.107802.1193010.158208.71570K562PRPF8
SNHG9ENSG00000255198.377.2821032.654801.242704.094003.30240K562PTBP1
SNHG9ENSG00000255198.3140.0401060.942801.200205.249604.12820K562PUF60
SNHG9ENSG00000255198.369.6012027.286401.350803.223502.64500K562PUS1
SNHG9ENSG00000255198.371.9316031.268401.201803.241802.32560K562RBM22
SNHG9ENSG00000255198.378.4288030.666601.354603.499302.57790K562RPS19
SNHG9ENSG00000255198.346.7340018.630401.326702.721701.56620K562SRSF7
SNHG9ENSG00000255198.374.7834026.637101.489204.053502.04630K562XRCC6
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNHG9 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SNHG9 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SNHG9 is not avaliable on ENCORE database.