RP11-96O20.4

General Information

Gene Name       : RP11-96O20.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-96O20.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-96O20.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-96O20.4 RNA is bound by 12 proteins.  







eCLIP assay for RP11-96O20.4 is not avaliable on ENCORE database.





12 proteins are bound to RP11-96O20.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr154587962345879692+5'-UTR,CDS5.216464.57565HepG2DDX3X
chr154587960345879717+5'-UTR,CDS3.467593.63681K562RBM15
chr154587965345879706+5'-UTR,CDS6.2892313.32692K562XRCC6
chr154590159345901658+3'-UTR,intron-Distal3.425017.35556K562PUM2
chr154589872445898770+3'-UTR,intron-Distal4.376196.41483HepG2SUB1
chr154589744045897515+intron-Distal5.198365.61339K562QKI
chr154589742745897543+intron-Distal,intron-Proximal4.587284.51735HepG2QKI
chr154589943245899539+3'-UTR,intron-Distal3.622484.83406HepG2QKI
chr154590075145900852+3'-UTR,intron-Distal3.2784112.97935K562UPF1
chr154589859345898689+3'-UTR,CDS,intron-Distal4.337623.02457HepG2BCLAF1
chr154590161245901694+3'-UTR,intron-Distal3.601054.01064HepG2FUBP3
chr154589762445897656+3'-UTR,CDS,intron-Distal,intron-Proximal4.628536.47760K562YBX3
chr154589531845895387+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.188083.69775K562YBX3
chr154590021245900287+3'-UTR,intron-Distal4.968508.90208K562IGF2BP1
chr154590021445900257+3'-UTR,intron-Distal4.025643.89948K562YBX3
chr154590128945901329+3'-UTR,intron-Distal4.781855.38606K562FAM120A
chr154590142845901515+3'-UTR,intron-Distal3.485553.86052K562YBX3
chr154590135345901378+3'-UTR,intron-Distal5.126616.77594K562FAM120A
chr154590147245901504+3'-UTR,intron-Distal3.429715.05294K562UPF1
chr154590168645901792+3'-UTR,intron-Distal4.5400421.16718K562PUM2
chr154590108745901117+3'-UTR,intron-Distal4.131346.42251K562FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-96O20.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-96O20.4 is not available on ENCORE database.

  • 4 RBPs can affect the levels of RP11-96O20.4.  








The Knockdown/knockout RNA-Seq assay for RP11-96O20.4 is not available on ENCORE database.





4 RBPs can affect the gene expression of RP11-96O20.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-96O20.4ENSG00000260170.113.104600.0000099999.999904.279003.08140HepG2HDGF
RP11-96O20.4ENSG00000260170.110.845100.0000099999.999903.019402.40480HepG2SF3B4
RP11-96O20.4ENSG00000260170.110.971500.0000099999.999902.955202.35180K562AQR
RP11-96O20.4ENSG00000260170.19.301800.0000099999.999903.099402.12910K562ATP5C1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-96O20.4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of RP11-96O20.4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for RP11-96O20.4 is not avaliable on ENCORE database.