RP11-849F2.7

General Information

Gene Name : RP11-849F2.7
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-849F2.7)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-849F2.7 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-849F2.7 RNA is bound by 14 proteins.

eCLIP assay for RP11-849F2.7 is not avaliable on ENCORE database.

14 proteins are bound to RP11-849F2.7 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	8286476	8286508	-	5'-UTR,intron-Distal,intron-Proximal	3.95278	36.12991	K562	DDX3X
chr17	8286473	8286509	-	5'-UTR,intron-Distal,intron-Proximal	4.48123	4.54835	K562	NCBP2
chr17	8285585	8285633	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.01690	23.39327	K562	DDX3X
chr17	8286471	8286476	-	5'-UTR,intron-Distal	3.96044	35.15565	K562	DDX3X
chr17	8286468	8286474	-	5'-UTR,intron-Distal	4.49660	6.77156	K562	AQR
chr17	8286454	8286468	-	5'-UTR,intron-Distal	4.77754	10.60410	K562	AQR
chr17	8286473	8286508	-	5'-UTR,intron-Distal,intron-Proximal	3.02788	3.36075	K562	EIF3G
chr17	8286472	8286507	-	5'-UTR,intron-Distal,intron-Proximal	3.10622	6.55570	K562	GEMIN5
chr17	8286472	8286508	-	5'-UTR,intron-Distal,intron-Proximal	4.80717	69.92771	K562	PABPC4
chr17	8285620	8285634	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.86888	27.05715	K562	PABPC4
chr17	8286472	8286509	-	5'-UTR,intron-Distal,intron-Proximal	3.15122	14.02037	HepG2	LARP4
chr17	8285427	8285497	-	CDS,intron-Distal,intron-Proximal	3.42067	5.89228	HepG2	PRPF8
chr17	8285526	8285529	-	CDS,intron-Distal	3.01482	60.06441	K562	YBX3
chr17	8283155	8283186	-	3'-UTR,CDS,intron-Distal	3.09019	25.65035	K562	YBX3
chr17	8283113	8283115	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.18579	46.70051	K562	YBX3
chr17	8283112	8283146	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.43188	5.39047	HepG2	IGF2BP3
chr17	8283115	8283121	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.34635	51.06253	K562	YBX3
chr17	8283244	8283254	-	3'-UTR,CDS,intron-Distal	3.13585	20.38103	K562	YBX3
chr17	8280757	8280833	-	intron-Distal,intron-Proximal	3.62922	6.86031	HepG2	CSTF2
chr17	8281007	8281010	-	3'-UTR,CDS,intron-Distal	3.26800	48.40230	K562	YBX3
chr17	8280986	8280989	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.45046	71.02140	K562	YBX3
chr17	8280998	8281007	-	3'-UTR,CDS,intron-Distal	3.31829	68.36650	K562	YBX3
chr17	8280772	8280834	-	intron-Distal,intron-Proximal	5.03682	8.86792	K562	CSTF2T
chr17	8286431	8286440	-	5'-UTR,intron-Distal	5.97385	13.18785	K562	AQR
chr17	8286440	8286454	-	5'-UTR,intron-Distal	5.98456	12.64691	K562	AQR
chr17	8280989	8280998	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.23856	68.18836	K562	YBX3
chr17	8281750	8281837	-	intron-Distal	3.26856	6.16448	HepG2	HNRNPC
chr17	8280975	8281010	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.64541	6.63081	HepG2	IGF2BP3
chr17	8280873	8280919	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.52453	7.71865	HepG2	TRA2A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-849F2.7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-849F2.7 is not available on ENCORE database.
4 RBPs can affect the levels of RP11-849F2.7.

The Knockdown/knockout RNA-Seq assay for RP11-849F2.7 is not available on ENCORE database.

4 RBPs can affect the gene expression of RP11-849F2.7 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-849F2.7	ENSG00000263809.1	47.78870	15.17050	1.65530	3.52440	2.92310	HepG2	PTBP1
RP11-849F2.7	ENSG00000263809.1	0.00000	9.97210	-99999.99999	2.61950	1.91070	HepG2	TARDBP
RP11-849F2.7	ENSG00000263809.1	2.92130	18.30840	-2.64780	1.81490	1.33900	HepG2	TRIM56
RP11-849F2.7	ENSG00000263809.1	12.75720	0.68390	4.22130	2.38920	1.40380	K562	PUM1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-849F2.7 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-849F2.7 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	RP11-849F2.7	ENSG00000263809.1	chr17	-	8286098	8286316			8286179	8286316	8285460	8285633	0.28800	0.00012	0.01117	longer	HepG2	HNRNPK
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8283113	8283254	8285460	8285656	8274626	8275399	8286474	8286505	0.06400	0.01140	0.07044	1included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285956	8286042	8286098	8286316	8285460	8285633	8286474	8286505	-0.18800	0.00029	0.00308	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285956	8286042	8286179	8286316	8285460	8285633	8286474	8286505	-0.23100	0.00007	0.00089	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285956	8285993	8286098	8286316	8285460	8285633	8286474	8286505	-0.11500	0.01409	0.08331	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285956	8285993	8286179	8286316	8285460	8285633	8286474	8286505	-0.14500	0.00666	0.04560	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285956	8286035	8286098	8286316	8285460	8285633	8286474	8286505	-0.17100	0.00094	0.00866	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285956	8286035	8286179	8286316	8285460	8285633	8286474	8286505	-0.21200	0.00027	0.00288	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285895	8286042	8286179	8286316	8285460	8285633	8286474	8286505	-0.08000	0.01023	0.06454	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285895	8286035	8286098	8286316	8285460	8285633	8286474	8286505	-0.10100	0.00443	0.03240	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285895	8286035	8286179	8286316	8285460	8285633	8286474	8286505	-0.12900	0.00144	0.01254	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285895	8285993	8286098	8286316	8285460	8285633	8286474	8286505	-0.10500	0.00211	0.01738	2included	K562	AQR
MXE	RP11-849F2.7	ENSG00000263809.1	chr17	-	8285895	8285993	8286179	8286316	8285460	8285633	8286474	8286505	-0.13300	0.00091	0.00839	2included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-849F2.7

General Information

Functions

Localization

Domains (AlphaFold: RP11-849F2.7)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-849F2.7 is not avaliable on ENCORE database.

14 proteins are bound to RP11-849F2.7 RNA:

eCLIP assay for RP11-849F2.7 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-849F2.7 is not available on ENCORE database.

4 RBPs can affect the gene expression of RP11-849F2.7 :

The Knockdown/knockout RNA-Seq assay for RP11-849F2.7 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-849F2.7 :

The Knockdown/knockout RNA-Seq assay for RP11-849F2.7 is not avaliable on ENCORE database.