RP11-580I16.2

General Information

Gene Name : RP11-580I16.2
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-580I16.2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-580I16.2 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-580I16.2 RNA is bound by 9 proteins.

eCLIP assay for RP11-580I16.2 is not avaliable on ENCORE database.

9 proteins are bound to RP11-580I16.2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	45726573	45726654	-	intron-Distal	4.26070	3.30664	K562	NONO
chr17	45726590	45726777	-	intron-Distal,intron-Proximal	3.40747	7.70093	HepG2	PRPF4
chr17	45708496	45708567	-	intron-Distal	4.44283	5.20135	HepG2	QKI
chr17	45726558	45726634	-	intron-Distal	4.15037	3.81373	HepG2	DROSHA
chr17	45726577	45726652	-	intron-Distal	3.56948	10.72164	HepG2	CSTF2T
chr17	45726652	45726726	-	intron-Distal	4.28954	16.46144	HepG2	CSTF2T
chr17	45726569	45726667	-	intron-Distal	3.51282	4.48425	K562	CSTF2T
chr17	45726671	45726780	-	intron-Distal,intron-Proximal	3.47327	3.34952	HepG2	FASTKD2
chr17	45726657	45726722	-	intron-Distal	5.59622	12.32598	HepG2	FAM120A
chr17	45726656	45726762	-	intron-Distal	4.32290	4.07596	K562	GTF2F1
chr17	45726722	45726782	-	intron-Distal,intron-Proximal	4.29619	8.84898	HepG2	FAM120A
chr17	45726608	45726766	-	intron-Distal	4.62389	9.73265	HepG2	GTF2F1
chr17	45726650	45726776	-	intron-Distal,intron-Proximal	3.43543	4.47051	K562	EWSR1
chr17	45726726	45726783	-	intron-Distal,intron-Proximal	3.85410	8.27616	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-580I16.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-580I16.2 is not available on ENCORE database.
2 RBPs can affect the levels of RP11-580I16.2.

The Knockdown/knockout RNA-Seq assay for RP11-580I16.2 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP11-580I16.2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-580I16.2	ENSG00000263766.1	20.74870	5.52880	1.90790	2.04110	1.44020	HepG2	CPSF6
RP11-580I16.2	ENSG00000263766.1	21.75670	4.05360	2.42410	2.58990	2.00980	K562	HNRNPC
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-580I16.2 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-580I16.2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	RP11-580I16.2	ENSG00000263766.1	chr17	-	45703912	45703993			45699207	45699453	45713877	45713967	0.27800	0.00060	0.06614	included	K562	FMR1
SE	RP11-580I16.2	ENSG00000263766.1	chr17	-	45703912	45703993			45699207	45699453	45713877	45713967	0.35900	0.00007	0.00482	included	K562	SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-580I16.2

General Information

Functions

Localization

Domains (AlphaFold: RP11-580I16.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-580I16.2 is not avaliable on ENCORE database.

9 proteins are bound to RP11-580I16.2 RNA:

eCLIP assay for RP11-580I16.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-580I16.2 is not available on ENCORE database.

2 RBPs can affect the gene expression of RP11-580I16.2 :

The Knockdown/knockout RNA-Seq assay for RP11-580I16.2 is not available on ENCORE database.

2 RBPs can affect the splicing of RP11-580I16.2 :

The Knockdown/knockout RNA-Seq assay for RP11-580I16.2 is not avaliable on ENCORE database.