RP11-108K3.1

General Information

Gene Name : RP11-108K3.1
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-108K3.1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-108K3.1 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-108K3.1 RNA is bound by 23 proteins.

eCLIP assay for RP11-108K3.1 is not avaliable on ENCORE database.

23 proteins are bound to RP11-108K3.1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	51387039	51387122	+	intron-Distal	3.62078	6.15331	HepG2	NKRF
chr15	51426846	51426904	+	intron-Distal	5.01719	5.85495	HepG2	QKI
chr15	51416807	51416900	+	intron-Distal	3.57975	4.61322	HepG2	MATR3
chr15	51387132	51387191	+	intron-Distal	4.71678	3.83748	HepG2	XRN2
chr15	51411808	51411866	+	intron-Distal	3.62092	5.78794	HepG2	SUGP2
chr15	51427979	51428062	+	intron-Distal	4.55505	4.87774	HepG2	HNRNPK
chr15	51515745	51515859	+	intron-Distal	3.20022	5.22218	HepG2	HNRNPL
chr15	51465368	51465467	+	intron-Distal	3.63796	3.10466	K562	SAFB2
chr15	51509280	51509344	+	intron-Distal	4.41855	5.30852	HepG2	HNRNPL
chr15	51413799	51413833	+	intron-Distal	3.92202	3.63454	HepG2	SUGP2
chr15	51355477	51355548	+	intron-Distal	3.56835	8.57376	HepG2	HLTF
chr15	51330704	51330759	+	intron-Distal	3.33263	6.51048	HepG2	HNRNPM
chr15	51427712	51427764	+	intron-Distal	4.23054	6.11036	HepG2	XPO5
chr15	51386872	51386933	+	intron-Distal	5.46851	10.34825	HepG2	CSTF2T
chr15	51370798	51370835	+	intron-Distal	3.83857	5.38389	HepG2	PCBP2
chr15	51509199	51509280	+	intron-Distal	3.83174	7.66770	HepG2	HNRNPL
chr15	51385881	51385983	+	intron-Distal	3.08687	5.35897	HepG2	PRPF4
chr15	51395249	51395292	+	intron-Distal	4.52460	6.59655	K562	PTBP1
chr15	51373968	51374029	+	intron-Distal	3.61935	3.12080	HepG2	XPO5
chr15	51395292	51395337	+	intron-Distal	4.75432	10.52606	K562	PTBP1
chr15	51381766	51381849	+	intron-Distal	3.32196	3.51804	HepG2	HNRNPL
chr15	51449958	51450093	+	intron-Distal	3.74073	5.82228	HepG2	RBFOX2
chr15	51387324	51387347	+	intron-Distal	4.27933	4.86859	HepG2	CSTF2T
chr15	51387525	51387568	+	intron-Distal	4.18881	3.86417	HepG2	PRPF4
chr15	51486478	51486531	+	intron-Distal	5.65382	5.89856	K562	PTBP1
chr15	51395193	51395294	+	intron-Distal	4.84047	23.07045	HepG2	PTBP1
chr15	51444120	51444242	+	intron-Distal	4.26157	4.48935	K562	CSTF2T
chr15	51370760	51370843	+	intron-Distal	4.89332	7.46068	HepG2	HNRNPK
chr15	51370797	51370854	+	intron-Distal	4.48974	4.80493	K562	RBFOX2
chr15	51395174	51395293	+	intron-Distal	5.33170	17.74444	HepG2	PCBP2
chr15	51330803	51330867	+	intron-Distal	5.64337	10.04692	HepG2	HNRNPM
chr15	51330799	51330857	+	intron-Distal	3.01692	4.39502	K562	HNRNPM
chr15	51330977	51331019	+	intron-Distal	3.21450	3.69184	HepG2	SUGP2
chr15	51385912	51385985	+	intron-Distal	3.44324	4.48983	K562	TIA1
chr15	51427968	51428077	+	intron-Distal	3.97293	15.71316	HepG2	QKI
chr15	51395224	51395342	+	intron-Distal	3.69009	4.97279	K562	MATR3
chr15	51411489	51411575	+	intron-Distal	3.07719	4.86332	HepG2	SUGP2
chr15	51402820	51402912	+	intron-Distal	3.33419	8.97298	HepG2	XPO5
chr15	51369294	51369390	+	intron-Distal	4.51711	8.48623	HepG2	PCBP2
chr15	51442419	51442528	+	intron-Distal	3.50453	4.42924	HepG2	HLTF
chr15	51330640	51330704	+	intron-Distal	3.40585	4.67673	HepG2	HNRNPM
chr15	51385763	51385826	+	intron-Distal	3.94752	5.34741	HepG2	NKRF
chr15	51363688	51363781	+	intron-Distal	4.53891	5.88023	HepG2	HNRNPL
chr15	51441270	51441365	+	intron-Distal	4.42632	7.75161	HepG2	QKI
chr15	51426915	51426958	+	intron-Distal	4.33380	3.80778	HepG2	QKI
chr15	51381265	51381345	+	intron-Distal	4.25909	4.83379	HepG2	HNRNPK
chr15	51427973	51428060	+	intron-Distal	4.04287	3.33442	K562	HNRNPK
chr15	51330595	51330640	+	intron-Distal	3.96209	3.68481	HepG2	HNRNPM
chr15	51370814	51370851	+	intron-Distal	5.46620	21.29723	HepG2	RBFOX2
chr15	51330669	51330771	+	intron-Distal	5.23936	9.48713	K562	HNRNPM
chr15	51414470	51414515	+	intron-Distal	3.02597	3.00129	HepG2	SUGP2
chr15	51486448	51486529	+	intron-Distal	5.70835	11.59253	HepG2	PTBP1
chr15	51385910	51385980	+	intron-Distal	4.02097	11.24360	HepG2	CSTF2T
chr15	51387518	51387576	+	intron-Distal	4.49908	10.62681	HepG2	CSTF2T
chr15	51370835	51370872	+	intron-Distal	4.22463	5.76537	HepG2	PCBP2
chr15	51355118	51355201	+	intron-Distal	4.12395	3.65589	K562	SAFB2
chr15	51330505	51330595	+	intron-Distal	4.13980	6.91468	HepG2	HNRNPM
chr15	51371125	51371194	+	intron-Distal	4.75432	4.90095	K562	PTBP1
chr15	51395289	51395337	+	intron-Distal	4.87060	8.01961	HepG2	MATR3
chr15	51331315	51331356	+	intron-Distal	5.33468	10.20783	HepG2	HNRNPM
chr15	51402934	51403025	+	intron-Distal	4.58450	5.33511	HepG2	HNRNPK
chr15	51387140	51387197	+	intron-Distal	4.14100	6.48652	HepG2	CSTF2T
chr15	51330857	51330907	+	intron-Distal	4.51045	4.53244	K562	HNRNPM
chr15	51396722	51396816	+	intron-Distal	3.10809	3.02792	HepG2	RBFOX2
chr15	51370796	51370814	+	intron-Distal	4.85181	17.74421	HepG2	RBFOX2
chr15	51330513	51330609	+	intron-Distal	3.97875	7.28460	K562	HNRNPM
chr15	51387028	51387101	+	intron-Distal	5.83410	15.63248	HepG2	CSTF2T
chr15	51449977	51450086	+	intron-Distal	3.01858	3.62838	HepG2	FAM120A
chr15	51372709	51372821	+	intron-Distal	3.74940	3.59803	HepG2	PTBP1
chr15	51387476	51387518	+	intron-Distal	3.17352	4.46520	HepG2	CSTF2T
chr15	51386166	51386230	+	intron-Distal	3.35791	3.10946	HepG2	SFPQ
chr15	51410206	51410364	+	intron-Distal	3.20373	5.82512	HepG2	SUGP2
chr15	51444113	51444154	+	intron-Distal	5.13241	9.61181	HepG2	CSTF2
chr15	51330704	51330776	+	intron-Distal	3.09301	6.13708	HepG2	SUGP2
chr15	51387487	51387569	+	intron-Distal	4.42254	4.71107	K562	CSTF2T
chr15	51412295	51412357	+	intron-Distal	3.83998	6.25619	HepG2	SUGP2
chr15	51387462	51387525	+	intron-Distal	3.71816	5.55742	HepG2	PRPF4
chr15	51396404	51396486	+	intron-Distal	3.25044	3.04190	HepG2	MATR3
chr15	51531190	51531257	+	intron-Distal	3.70266	3.69311	HepG2	CSTF2
chr15	51427870	51427968	+	intron-Distal	5.63945	24.49365	HepG2	QKI
chr15	51387037	51387096	+	intron-Distal	4.29395	4.23643	HepG2	XRN2
chr15	51539334	51539399	+	intron-Distal	4.09607	3.78533	HepG2	PTBP1
chr15	51580384	51580439	+	intron-Distal	4.72764	6.13079	HepG2	HNRNPK
chr15	51350707	51350821	+	intron-Distal	4.02597	6.06017	HepG2	QKI
chr15	51371104	51371201	+	intron-Distal	3.39049	3.33633	HepG2	MATR3
chr15	51387479	51387536	+	intron-Distal	4.48366	4.69321	HepG2	GTF2F1
chr15	51387638	51387717	+	intron-Distal	4.44603	10.86370	HepG2	CSTF2T
chr15	51387135	51387214	+	intron-Distal	5.35441	9.38592	HepG2	NKRF
chr15	51344914	51344994	+	intron-Distal	3.80393	3.07008	K562	NONO
chr15	51330720	51330773	+	intron-Distal	3.57577	4.31658	K562	EXOSC5
chr15	51387474	51387535	+	intron-Distal	3.57722	9.34729	HepG2	FAM120A
chr15	51387494	51387560	+	intron-Distal	3.41215	6.74715	HepG2	NKRF
chr15	51579795	51579879	+	intron-Distal	4.47441	5.13071	HepG2	HNRNPK
chr15	51395294	51395336	+	intron-Distal	5.22322	14.96622	HepG2	PTBP1
chr15	51355465	51355541	+	intron-Distal	4.19463	4.72697	K562	SAFB2
chr15	51330472	51330505	+	intron-Distal	3.47738	3.11000	HepG2	HNRNPM
chr15	51395250	51395289	+	intron-Distal	4.66144	5.61842	HepG2	MATR3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-108K3.1 is not avaliable on ENCORE database.

Summary

Diffrential Expression

The Knockdown/knockout assay for RP11-108K3.1 is not available on ENCORE database.
No RBPs affect the gene expression of RP11-108K3.1 on ENCORE database.

RP11-108K3.1

General Information

Functions

Localization

Domains (AlphaFold: RP11-108K3.1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-108K3.1 is not avaliable on ENCORE database.

23 proteins are bound to RP11-108K3.1 RNA:

eCLIP assay for RP11-108K3.1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-108K3.1 is not available on ENCORE database.

No RBPs affect the gene expression of RP11-108K3.1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-108K3.1 is not available on ENCORE database.

No RBPs affect the alternative splcing events of RP11-108K3.1 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP11-108K3.1 is not avaliable on ENCORE database.