RP11-1012A1.4

General Information

Gene Name       : RP11-1012A1.4
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RP11-1012A1.4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RP11-1012A1.4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RP11-1012A1.4 RNA is bound by 17 proteins.  







eCLIP assay for RP11-1012A1.4 is not avaliable on ENCORE database.





17 proteins are bound to RP11-1012A1.4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr146812657168126637-3'-UTR,CDS,intron-Distal,intron-Proximal4.460615.16762K562YBX3
chr146812919368129217-3'-UTR,CDS,intron-Distal,intron-Proximal3.170594.62864K562ZNF622
chr146812651068126639-3'-UTR,CDS,intron-Distal,intron-Proximal3.540165.91739K562UCHL5
chr146812651168126580-3'-UTR,CDS,intron-Distal,intron-Proximal3.263853.94979HepG2BCLAF1
chr146812649268126640-3'-UTR,CDS,intron-Distal,intron-Proximal3.794788.14338K562ZNF800
chr146812658068126638-3'-UTR,CDS,intron-Distal,intron-Proximal3.593114.09885HepG2BCLAF1
chr146812644768126608-3'-UTR,CDS,intron-Distal,intron-Proximal3.595196.18332HepG2GRWD1
chr146812921768129252-3'-UTR,CDS,intron-Distal3.619916.74842K562ZNF622
chr146815698168157011-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.5339316.46860HepG2SND1
chr146815190468151922-3'-UTR,CDS,intron-Distal,intron-Proximal4.4641113.57653HepG2SND1
chr146815174968151816-3'-UTR,CDS,intron-Distal,intron-Proximal5.5218434.35092HepG2SND1
chr146815176068151832-3'-UTR,CDS,intron-Distal,intron-Proximal3.834528.45760HepG2RPS3
chr146815174368151823-3'-UTR,CDS,intron-Distal,intron-Proximal4.9300112.80264K562SND1
chr146815182368151905-3'-UTR,CDS,intron-Distal,intron-Proximal5.7277713.70656K562SND1
chr146815696168156981-5'-UTR,CDS,intron-Distal,intron-Proximal4.4451314.91806HepG2SND1
chr146815701168157074-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal4.2535813.40115HepG2SND1
chr146815696068157016-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal6.0166816.95143K562SND1
chr146815692768156960-5'-UTR,CDS,intron-Distal,intron-Proximal5.454639.57345K562SND1
chr146815692668156961-5'-UTR,CDS,intron-Distal,intron-Proximal4.3833616.70489HepG2SND1
chr146815185568151903-3'-UTR,CDS,intron-Distal,intron-Proximal5.2697719.02243HepG2SND1
chr146815702268157086-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.558208.83606K562SND1
chr146815190568151922-3'-UTR,CDS,intron-Distal,intron-Proximal4.809875.61687K562SND1
chr146814459968144665-3'-UTR,intron-Distal,intron-Proximal3.763903.14501HepG2IGF2BP3
chr146814454968144591-3'-UTR,intron-Distal3.222576.68047HepG2UPF1
chr146814120368141328-5'-UTR,CDS,intron-Distal,intron-Proximal3.313473.19733K562ZNF622
chr146814109468141176-CDS,intron-Distal4.181619.80049K562YBX3
chr146814429468144383-3'-UTR,intron-Distal3.565463.93340HepG2LIN28B
chr146814499468145100-3'-UTR,CDS,intron-Distal4.1971816.23235HepG2SND1
chr146814550068145557-intron-Distal4.227573.77802HepG2U2AF2
chr146814118268141247-5'-UTR,CDS,intron-Distal4.693563.99162HepG2DDX3X
chr146814510068145138-3'-UTR,CDS,intron-Distal3.556486.16769HepG2SND1
chr146814501368145069-3'-UTR,CDS,intron-Distal3.073753.24816K562YBX3
chr146814502668145077-3'-UTR,CDS,intron-Distal3.744296.73622HepG2RPS3
chr146814124768141332-5'-UTR,intron-Distal,intron-Proximal4.5425011.11007HepG2DDX3X
chr146814439968144478-3'-UTR,intron-Distal4.920086.67079HepG2LIN28B
chr146814459168144705-3'-UTR,intron-Distal,intron-Proximal3.5153911.25038HepG2UPF1
chr146815708668157139-3'-UTR,CDS,intron-Distal,intron-Proximal3.964964.68317K562SND1
chr146814124268141292-5'-UTR,intron-Distal4.571164.15208K562RBM15
chr146814109068141182-CDS,intron-Distal3.094594.28697K562ZNF622
chr146814121268141322-5'-UTR,intron-Distal3.868393.19625HepG2NCBP2
chr146814459268144668-3'-UTR,intron-Distal,intron-Proximal3.005165.04083HepG2IGF2BP1
chr146815709468157136-3'-UTR,CDS,intron-Distal,intron-Proximal4.096944.95361HepG2SND1
chr146814431568144378-3'-UTR,intron-Distal5.970035.76336K562PUM2
chr146814499268145026-3'-UTR,intron-Distal4.674087.91835HepG2RPS3
chr146814110368141340-5'-UTR,CDS,intron-Distal,intron-Proximal4.181326.73521K562DDX3X
chr146814502668145109-3'-UTR,CDS,intron-Distal3.628487.71112HepG2LIN28B
chr146814504368145111-3'-UTR,CDS,intron-Distal3.408933.71253K562LIN28B
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RP11-1012A1.4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RP11-1012A1.4 is not available on ENCORE database.

  • 1 RBPs can affect the levels of RP11-1012A1.4.  








The Knockdown/knockout RNA-Seq assay for RP11-1012A1.4 is not available on ENCORE database.





1 RBPs can affect the gene expression of RP11-1012A1.4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RP11-1012A1.4ENSG00000258466.15.916900.0000099999.999901.824401.32710HepG2PUF60
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RP11-1012A1.4 is not available on ENCORE database.





5 RBPs can affect the splicing of RP11-1012A1.4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXERP11-1012A1.4ENSG00000258466.1chr14-6812919368129252681517316815192168126536681266396815692868157084-0.134000.000790.036072includedK562FXR1
MXERP11-1012A1.4ENSG00000258466.1chr14-6812919368129252681517316815192168126536681266396815692868157084-0.163000.000000.000152includedK562EIF4G2
MXERP11-1012A1.4ENSG00000258466.1chr14-68129193681292526815173168151921681265366812663968156928681570840.089000.000330.003211includedHepG2U2AF2
MXERP11-1012A1.4ENSG00000258466.1chr14-6812919368129252681517316815192168126536681266396815692868157084-0.130000.000040.019102includedK562APOBEC3C
MXERP11-1012A1.4ENSG00000258466.1chr14-68129193681292526815173168151921681265366812663968156928681570840.144000.000010.003621includedHepG2DKC1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RP11-1012A1.4 is not avaliable on ENCORE database.