HOXC6

General Information

Gene Name       : HOXC6
Gene ID             : ENSG00000197757.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOXC6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOXC6ENSG00000197757.70.010.040.03ENCSR000AEF
HepG2HOXC6ENSG00000197757.70.000.000.00ENCSR985KAT
K562HOXC6ENSG00000197757.72.482.382.43ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOXC6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HOXC6 RNA is bound by 11 proteins.  







eCLIP assay for HOXC6 is not avaliable on ENCORE database.





11 proteins are bound to HOXC6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr125439146154391575+intron-Distal5.3655110.52606K562PTBP1
chr125438958354389643+intron-Distal4.785246.90606K562EWSR1
chr125438910554389196+intron-Distal3.783014.51839K562EWSR1
chr125439661654396719+3'-UTR,intron-Distal3.167564.12241K562SAFB2
chr125439249254392583+intron-Distal4.331545.04359K562HNRNPK
chr125439360054393704+intron-Distal3.848023.74713K562FUS
chr125439793854397988+intron-Distal3.761573.17740K562CSTF2T
chr125439382654393889+intron-Distal,intron-Proximal4.463055.40707K562CSTF2T
chr125439015554390248+intron-Distal4.3821510.30731K562CSTF2T
chr125439295554393034+intron-Distal3.030783.31456K562TIA1
chr125440107254401132+intron-Distal3.004293.25653K562CSTF2T
chr125439952954399599+intron-Distal3.282313.50009K562CSTF2T
chr125439015354390246+intron-Distal3.959223.74713K562FUS
chr125439412454394196+CDS,intron-Distal4.252163.98553K562NONO
chr125438921854389277+intron-Distal4.400134.23759K562NONO
chr125438977954389935+intron-Distal3.063835.77407K562FUS
chr125438976954389861+intron-Distal4.842974.75718K562EWSR1
chr125440781654407876+intron-Distal4.428283.91475K562PTBP1
chr125441225054412310+intron-Distal3.944643.43867K562CSTF2T
chr125438902454389166+intron-Distal4.117544.16295K562FUS
chr125439949754399613+intron-Distal3.705323.34442K562FUS
chr125439641554396500+3'-UTR,CDS,intron-Distal3.840746.11943K562UCHL5
chr125439040854390479+intron-Distal3.942636.60022K562EWSR1
chr125438978554389897+intron-Distal3.885473.12651K562SAFB2
chr125440301354403127+5'-UTR,CDS,intron-Distal3.936823.70058K562CSTF2T
chr125439663254396715+3'-UTR,intron-Distal3.515654.02206K562CSTF2T
chr125438979154389853+intron-Distal4.173227.11359K562CSTF2T
chr125438985354389899+intron-Distal4.174354.49655K562CSTF2T
chr125439295354393045+intron-Distal3.551087.28606K562CSTF2T
chr125440044954400495+intron-Distal3.837573.43867K562CSTF2T
chr125439004654390092+intron-Distal3.568764.20405K562EWSR1
chr125439468754394738+intron-Distal3.862393.37414K562CSTF2T
chr125439757654397657+intron-Distal4.393094.94603K562CSTF2T
chr125439731354397357+intron-Distal3.017053.17504K562CSTF2T
chr125439297254393038+intron-Distal4.361244.75718K562EWSR1
chr125438944954389537+intron-Distal3.628763.19850K562FUS
chr125439660754396714+3'-UTR,intron-Distal4.554386.73547K562FUS
chr125439032354390395+intron-Distal3.595583.99385K562CSTF2T
chr125439663754396713+3'-UTR,intron-Distal3.858993.24706K562NOLC1
chr125439615754396223+CDS,intron-Distal,intron-Proximal3.469436.71722K562SF3B4
chr125438945954389509+intron-Distal4.377094.16830K562EWSR1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HOXC6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOXC6 is not available on ENCORE database.

  • 7 RBPs can affect the levels of HOXC6.  








The Knockdown/knockout RNA-Seq assay for HOXC6 is not available on ENCORE database.





7 RBPs can affect the gene expression of HOXC6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOXC6ENSG00000197757.739.676600.625805.986308.517907.64000HepG2AKAP1
HOXC6ENSG00000197757.7140.6330073.833900.929503.389802.75380K562AQR
HOXC6ENSG00000197757.777.23740162.20820-1.070505.961505.05710K562DDX47
HOXC6ENSG00000197757.7171.49120100.657000.768602.981602.09260K562FMR1
HOXC6ENSG00000197757.745.8983083.15580-0.857402.397601.40060K562HNRNPA1
HOXC6ENSG00000197757.7138.4841074.104200.902002.179001.32170K562PABPN1
HOXC6ENSG00000197757.759.9140098.65270-0.719501.988901.30780K562POLR2G
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOXC6 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HOXC6 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HOXC6 is not avaliable on ENCORE database.