GPR78

General Information

Gene Name : GPR78
Gene ID : ENSG00000155269.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GPR78)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GPR78	ENSG00000155269.11	0.00	0.02	0.01	ENCSR000AEF
HepG2	GPR78	ENSG00000155269.11	0.02	0.01	0.01	ENCSR985KAT
K562	GPR78	ENSG00000155269.11	0.00	0.04	0.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GPR78 is not avaliable on ENCORE database.

Proteins bound to RNA

GPR78 RNA is bound by 7 proteins.

eCLIP assay for GPR78 is not avaliable on ENCORE database.

7 proteins are bound to GPR78 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	8601084	8601201	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.10439	7.67169	K562	SF3B4
chr4	8605645	8605750	+	3'-UTR,5'-UTR,CDS,intron-Proximal	3.35462	6.11414	K562	BUD13
chr4	8610268	8610310	+	intron-Distal	5.06820	6.56385	K562	AKAP8L
chr4	8609922	8609952	+	intron-Distal	3.38242	4.23595	K562	AKAP8L
chr4	8610564	8610617	+	intron-Distal	6.28307	16.13026	K562	AGGF1
chr4	8599952	8600040	+	intron-Distal	4.74870	3.30336	K562	EWSR1
chr4	8595717	8595775	+	intron-Distal	5.04802	8.03474	K562	CSTF2T
chr4	8607085	8607137	+	intron-Distal	5.24934	18.41872	K562	AGGF1
chr4	8599965	8600062	+	intron-Distal	4.57490	18.24014	K562	CSTF2T
chr4	8611610	8611646	+	intron-Distal	4.85782	6.23326	K562	AKAP8L
chr4	8610228	8610328	+	intron-Distal	3.72193	5.81451	K562	CSTF2T
chr4	8600669	8600754	+	intron-Distal	3.19662	9.24072	K562	CSTF2T
chr4	8607315	8607486	+	intron-Distal	8.00661	60.09793	K562	AGGF1
chr4	8597509	8597552	+	intron-Distal	3.50429	4.91684	K562	CSTF2T
chr4	8611122	8611229	+	intron-Distal	8.28847	69.06218	K562	AGGF1
chr4	8611043	8611117	+	intron-Distal	5.22084	11.86114	K562	AKAP8L
chr4	8610559	8610630	+	intron-Distal	5.21882	12.52040	K562	AKAP8L
chr4	8609155	8609257	+	intron-Distal,intron-Proximal	4.21940	6.19396	K562	AKAP8L
chr4	8595244	8595318	+	intron-Distal	3.46184	8.47243	K562	CSTF2T
chr4	8610363	8610413	+	intron-Distal	6.31940	13.02186	K562	AGGF1
chr4	8606008	8606070	+	intron-Distal,intron-Proximal	5.30048	5.45161	K562	AGGF1
chr4	8613307	8613372	+	intron-Distal	4.51188	4.84484	K562	AKAP8L
chr4	8595388	8595452	+	intron-Distal	3.88395	12.93223	K562	CSTF2T
chr4	8607314	8607412	+	intron-Distal	3.94968	5.32679	K562	AKAP8L
chr4	8610357	8610413	+	intron-Distal	5.39138	8.66231	K562	AKAP8L
chr4	8612161	8612199	+	intron-Distal	4.13096	6.19396	K562	AKAP8L
chr4	8600688	8600766	+	intron-Distal	3.98359	8.38253	K562	AKAP8L
chr4	8611848	8611902	+	intron-Distal	5.31558	9.09165	K562	AKAP8L
chr4	8600606	8600655	+	intron-Distal	3.47706	7.51684	K562	CSTF2T
chr4	8596186	8596220	+	intron-Distal	4.46154	5.81141	K562	CSTF2T
chr4	8613084	8613143	+	intron-Distal,intron-Proximal	4.35451	4.75311	K562	CSTF2T
chr4	8597404	8597471	+	intron-Distal	3.34713	5.87066	K562	CSTF2T
chr4	8607210	8607315	+	intron-Distal	6.85952	42.04650	K562	AGGF1
chr4	8611122	8611204	+	intron-Distal	5.91171	14.23411	K562	HNRNPL
chr4	8609408	8609466	+	intron-Distal	4.89138	6.56385	K562	AKAP8L
chr4	8612186	8612259	+	intron-Distal	3.62341	5.79195	K562	CSTF2T
chr4	8595154	8595211	+	intron-Distal	3.69735	7.38240	K562	CSTF2T
chr4	8595452	8595493	+	intron-Distal	3.81467	6.34048	K562	CSTF2T
chr4	8594870	8594904	+	intron-Distal	4.48690	5.54639	K562	CSTF2T
chr4	8610500	8610554	+	intron-Distal	5.53464	6.89521	K562	AKAP8L
chr4	8610860	8610947	+	intron-Distal	6.20360	25.46712	K562	AGGF1
chr4	8596296	8596339	+	intron-Distal	3.70642	5.81451	K562	CSTF2T
chr4	8600754	8600822	+	intron-Distal	3.16644	6.49465	K562	CSTF2T
chr4	8606002	8606041	+	intron-Distal,intron-Proximal	3.32263	3.51298	K562	AKAP8L
chr4	8600654	8600688	+	intron-Distal	4.91291	6.52896	K562	AKAP8L
chr4	8597055	8597163	+	intron-Distal	3.49403	10.47007	K562	CSTF2T
chr4	8610947	8611007	+	intron-Distal	5.82804	18.38203	K562	AGGF1
chr4	8608277	8608335	+	intron-Distal	4.09935	3.37414	K562	CSTF2T
chr4	8610462	8610613	+	intron-Distal	3.71916	9.02179	K562	CSTF2T
chr4	8611572	8611648	+	intron-Distal	4.39058	4.75311	K562	CSTF2T
chr4	8611052	8611122	+	intron-Distal	7.98408	49.39538	K562	AGGF1
chr4	8599858	8599915	+	intron-Distal	3.88173	5.29044	K562	CSTF2T
chr4	8601069	8601125	+	intron-Distal,intron-Proximal	3.35656	6.12137	K562	CSTF2T
chr4	8612199	8612241	+	intron-Distal	5.18386	8.22720	K562	AKAP8L
chr4	8607137	8607201	+	intron-Distal	7.00759	24.52856	K562	AGGF1
chr4	8608163	8608285	+	intron-Distal	4.63876	10.22148	K562	AKAP8L
chr4	8611421	8611491	+	intron-Distal	4.29486	4.49655	K562	CSTF2T
chr4	8611121	8611207	+	intron-Distal	5.15030	16.17321	K562	AKAP8L
chr4	8595647	8595717	+	intron-Distal	3.20836	6.36518	K562	CSTF2T
chr4	8607324	8607451	+	intron-Distal	4.70420	7.45355	K562	HNRNPL
chr4	8611057	8611122	+	intron-Distal	5.34941	9.22379	K562	HNRNPL
chr4	8612813	8612883	+	intron-Distal,intron-Proximal	5.04431	13.00776	K562	AGGF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for GPR78 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for GPR78 is not available on ENCORE database.
4 RBPs can affect the levels of GPR78.

The Knockdown/knockout RNA-Seq assay for GPR78 is not available on ENCORE database.

4 RBPs can affect the gene expression of GPR78 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GPR78	ENSG00000155269.7	20.14990	2.71760	2.89030	3.39030	2.72820	HepG2	ACO1
GPR78	ENSG00000155269.7	8.70210	0.00000	99999.99990	2.22790	1.49810	HepG2	MSI2
GPR78	ENSG00000155269.7	23.83360	6.33800	1.91080	2.75990	1.60840	K562	EIF4B
GPR78	ENSG00000155269.7	0.00000	7.31940	-99999.99999	2.19180	1.64200	K562	FXR1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GPR78

General Information

Functions

Localization

Domains (AlphaFold: GPR78)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GPR78 is not avaliable on ENCORE database.

7 proteins are bound to GPR78 RNA:

eCLIP assay for GPR78 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GPR78 is not available on ENCORE database.

4 RBPs can affect the gene expression of GPR78 :

The Knockdown/knockout RNA-Seq assay for GPR78 is not available on ENCORE database.

No RBPs affect the alternative splcing events of GPR78 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for GPR78 is not avaliable on ENCORE database.