GPC5

General Information

Gene Name       : GPC5
Gene ID             : ENSG00000179399.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: GPC5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GPC5ENSG00000179399.140.270.320.30ENCSR000AEF
HepG2GPC5ENSG00000179399.140.070.000.04ENCSR985KAT
K562GPC5ENSG00000179399.140.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GPC5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GPC5 RNA is bound by 10 proteins.  







eCLIP assay for GPC5 is not avaliable on ENCORE database.





10 proteins are bound to GPC5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr139299095892991099+intron-Distal4.050508.01942K562SAFB2
chr139303463093034727+intron-Distal4.113646.67564K562CSTF2T
chr139295528592955350+intron-Distal4.830324.40618K562PTBP1
chr139317763993177744+intron-Distal3.535713.47685K562EIF4G2
chr139316581393165874+intron-Distal3.550834.12870K562PTBP1
chr139278810892788119+intron-Distal5.184849.57069K562TIA1
chr139278810692788134+intron-Distal4.518414.72743K562NONO
chr139278811992788133+intron-Distal5.184849.57069K562TIA1
chr139300282693002894+intron-Distal3.881243.54264K562SAFB2
chr139300274193002824+intron-Distal3.942233.54264K562SAFB2
chr139299790692997985+intron-Distal4.033664.15306K562SAFB2
chr139309739393097486+intron-Distal5.175488.54663K562PTBP1
chr139321161193211682+intron-Distal4.987283.26170K562EIF4G2
chr139299969692999775+intron-Distal3.790153.33164K562SAFB2
chr139299689492996956+intron-Distal3.596675.56248K562SAFB2
chr139278810892788133+intron-Distal4.482803.41594K562SMNDC1
chr139299803192998106+intron-Distal4.039934.07784K562SAFB2
chr139278810992788132+intron-Distal5.645124.21048K562DDX21
chr139330524493305326+intron-Distal3.898153.34609K562TARDBP
chr139295526892955349+intron-Distal5.324856.23225K562QKI
chr139319053693190673+intron-Distal5.517056.90462K562PTBP1
chr139298971492989828+intron-Distal3.291753.36168K562SAFB2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GPC5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GPC5 is not available on ENCORE database.

  • 7 RBPs can affect the levels of GPC5.  








The Knockdown/knockout RNA-Seq assay for GPC5 is not available on ENCORE database.





7 RBPs can affect the gene expression of GPC5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GPC5ENSG00000179399.910.062000.896703.488101.984001.39110HepG2CPSF6
GPC5ENSG00000179399.912.204800.0000099999.999903.809002.62900HepG2DDX5
GPC5ENSG00000179399.922.706404.693102.274402.662002.03460HepG2EIF4A3
GPC5ENSG00000179399.913.389600.897403.899202.285601.37040HepG2FTO
GPC5ENSG00000179399.923.331704.466602.385002.827502.14630HepG2IGF2BP2
GPC5ENSG00000179399.90.000007.51630-99999.999992.161801.66680HepG2PTBP1
GPC5ENSG00000179399.922.966802.298603.320604.345103.16820HepG2RPS10
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GPC5 is not available on ENCORE database.






No RBPs affect the alternative splcing events of GPC5 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for GPC5 is not avaliable on ENCORE database.